Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020742.1 Corchorus olitorius cultivar O-4 contig20775, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66421

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1138--1216
31
2.5
31
80
8
90
37
15
13
32
1.87
5668--5725
19
2.9
19
87
5
80
36
12
22
29
1.90
16486--16654
86
2.0
86
96
0
311
33
12
10
44
1.76
25255--25281
4
6.8
4
100
0
54
22
0
0
77
0.76
40031--40067
15
2.5
15
95
4
67
5
10
35
48
1.61
40655--40702
22
2.3
20
78
7
51
12
50
0
37
1.41
50451--50485
18
1.9
18
88
0
52
34
14
2
48
1.58
51744--51781
14
2.7
14
95
0
67
18
26
7
47
1.76
53996--54024
2
14.5
2
100
0
58
0
51
0
48
1.00
55477--55809
158
2.1
157
88
1
479
24
24
16
35
1.95

Tables:   1

The End!