Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020744.1 Corchorus olitorius cultivar O-4 contig20777, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39831

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8753--8843
35
2.6
35
92
0
146
17
23
35
24
1.95
9021--9087
33
2.0
33
97
0
125
34
5
19
40
1.76
14985--15056
29
2.4
29
82
11
92
41
15
19
23
1.89
17438--17505
28
2.3
31
92
7
115
30
10
14
44
1.79
21324--21381
19
2.9
19
84
5
71
29
20
12
37
1.89
23521--23579
19
3.0
19
78
9
73
37
8
20
33
1.83
23997--24029
15
2.1
17
88
11
52
48
15
0
36
1.45
31875--31913
14
2.8
14
88
0
51
76
2
7
12
1.09
37563--37622
29
2.1
29
87
6
86
25
8
3
63
1.38
37660--37711
18
3.0
18
83
5
63
40
0
0
59
0.97
38031--39286
330
3.9
320
77
8
1078
33
15
16
34
1.90

Tables:   1

The End!