Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020749.1 Corchorus olitorius cultivar O-4 contig20782, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107125

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3183--3246
21
3.2
20
80
8
67
39
12
18
29
1.88
11717--11853
60
2.3
60
83
2
186
39
16
15
29
1.89
11925--12059
60
2.2
60
82
7
150
28
17
18
36
1.93
12016--12077
31
2.0
31
83
0
79
32
17
16
33
1.92
23675--23800
60
2.1
60
92
0
207
23
26
19
30
1.98
23685--23791
31
3.5
31
67
7
85
23
28
20
27
1.99
27840--27875
4
9.8
4
93
6
51
72
0
27
0
0.85
27827--27875
21
2.4
21
96
3
91
71
0
28
0
0.86
39089--39113
1
25.0
1
100
0
50
0
0
0
100
0.00
40829--40879
22
2.2
23
82
6
59
13
7
1
76
1.09
57054--57107
28
1.9
28
88
0
81
42
11
7
38
1.68
61420--61515
48
2.0
48
93
0
165
25
19
22
32
1.98
62759--62809
6
9.0
6
89
10
81
86
0
13
0
0.58
70057--70087
15
2.1
15
100
0
62
32
0
32
35
1.58
70438--70472
16
2.2
16
90
10
54
0
0
17
82
0.66
70438--70472
5
6.6
5
90
9
52
0
0
17
82
0.66
71540--71626
40
2.2
40
97
2
167
54
8
14
22
1.67
72022--72066
17
2.6
18
79
10
58
2
6
13
77
1.05
80424--81059
318
2.0
319
93
1
1089
42
11
20
26
1.85
82315--82358
21
2.1
21
91
0
70
22
9
31
36
1.86
82509--82542
6
5.7
6
85
0
50
32
14
0
52
1.42
85840--85972
2
72.0
2
72
20
103
51
0
3
45
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85923--85968
19
2.2
20
81
18
58
58
0
2
39
1.10
86536--86596
21
2.9
21
85
0
77
34
16
29
19
1.94
89037--89166
65
2.0
65
100
0
260
36
18
20
24
1.94
89132--89215
42
2.0
42
100
0
168
50
23
14
11
1.76
90194--90257
32
2.0
32
96
0
119
18
7
29
43
1.78
100299--100509
73
2.9
73
98
0
404
28
22
7
41
1.80
102683--102721
19
2.1
19
85
0
51
15
20
23
41
1.90

Tables:   1

The End!