Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002075.1 Corchorus olitorius cultivar O-4 contig02075, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 693

Length: 1156
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29


Found at i:253 original size:30 final size:29

Alignment explanation


    Indices: 208--264  Score: 80
    Period size: 30  Copynumber: 1.9  Consensus size: 29

        198 GTTTATTAAT

                                           
        208 GAAACTTGAAAATTAAAGACATAAGATAAAG
          1 GAAACTTGAAAATTAAAG-CATAA-ATAAAG

                    *                  
        239 GAAA-TTGTAAATTAAAGCATAAATAA
          1 GAAACTTGAAAATTAAAGCATAAATAA

        265 CTAATCCTAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  28    4  0.16
  29    5  0.20
  30   12  0.48
  31    4  0.16

ACGTcount: A:0.58, C:0.05, G:0.14, T:0.23


Consensus pattern (29 bp):   
GAAACTTGAAAATTAAAGCATAAATAAAG
Done.