Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020750.1 Corchorus olitorius cultivar O-4 contig20783, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45662

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1017--1097
39
2.0
40
88
2
119
35
4
9
49
1.58
1156--1363
103
2.0
103
96
0
380
43
8
6
41
1.61
10033--10190
78
2.0
78
91
0
253
29
21
17
31
1.96
10181--10245
21
3.1
20
84
4
76
20
27
16
35
1.94
10563--10602
16
2.5
16
91
0
71
67
7
5
20
1.34
10559--10612
16
2.9
19
78
18
69
62
9
5
22
1.45
21374--21421
24
2.0
24
100
0
96
25
8
16
50
1.73
25530--25794
107
2.5
106
88
4
401
40
8
9
41
1.67
26139--26365
114
2.0
114
94
0
400
39
11
12
36
1.80
26256--28091
666
2.8
664
90
2
2759
35
16
15
32
1.90
26426--28091
333
5.0
333
88
2
2495
35
16
15
32
1.91
30083--30113
8
3.9
8
100
0
62
25
22
0
51
1.48
31739--32620
334
2.6
334
79
7
995
34
13
16
36
1.87
32871--32896
2
13.0
2
100
0
52
50
0
0
50
1.00
32887--35347
324
7.6
318
74
12
1711
32
14
16
35
1.89
33957--35560
316
5.0
312
77
9
894
32
14
16
36
1.89
37058--37119
31
2.0
31
100
0
124
38
6
16
38
1.74
42848--42881
8
4.2
8
88
0
50
26
23
2
47
1.66
43497--44302
322
2.5
323
83
4
947
34
14
15
34
1.89

Tables:   1

The End!