Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020751.1 Corchorus olitorius cultivar O-4 contig20784, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130596

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
173--994
323
2.5
321
83
6
958
34
15
16
33
1.90
494--2099
553
2.9
551
87
4
2162
33
14
16
35
1.89
7082--7167
32
2.7
32
88
0
127
23
27
22
26
1.99
25329--25393
31
2.2
29
88
5
94
27
21
13
36
1.92
38967--39048
39
2.1
39
100
0
164
20
28
13
37
1.90
41776--41820
19
2.3
20
85
7
58
46
6
13
33
1.69
42499--42537
13
3.0
13
85
7
53
51
23
10
15
1.73
42488--42533
13
3.3
13
82
11
56
43
28
10
17
1.82
61698--61763
28
2.3
27
77
10
69
18
12
7
62
1.52
71690--71958
139
1.9
141
89
3
418
24
21
10
43
1.84
86125--86160
10
3.5
10
85
7
54
8
11
0
80
0.90
105275--105309
11
3.2
11
91
0
61
0
2
17
80
0.84
106191--106242
25
2.1
25
82
7
61
42
0
0
57
0.98
106159--106242
22
3.8
22
73
12
66
39
2
1
57
1.20
110665--110830
31
5.4
31
100
0
332
25
36
28
9
1.87
110800--110913
47
2.4
47
98
0
219
28
29
27
14
1.96
124386--124428
22
2.0
22
90
4
70
13
16
18
51
1.77
124434--124487
27
2.0
27
100
0
108
51
14
18
14
1.76
124980--125064
42
2.0
42
97
0
161
23
8
9
58
1.56

Tables:   1

The End!