Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020752.1 Corchorus olitorius cultivar O-4 contig20785, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53875

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1190--1277
42
2.1
42
89
2
133
34
18
1
46
1.56
1248--1339
45
2.0
45
97
0
175
51
14
2
32
1.54
1641--1673
16
2.1
16
88
11
50
39
12
18
30
1.87
2773--2801
15
1.9
15
100
0
58
20
34
41
3
1.69
7456--7505
2
25.5
2
79
4
57
50
0
8
42
1.32
7457--7502
6
7.8
6
95
2
67
52
0
8
39
1.33
17320--17814
83
5.8
81
74
16
428
31
20
12
35
1.90
17060--17819
173
4.4
173
95
0
1313
30
21
12
35
1.91
25811--25835
12
2.1
12
100
0
50
16
0
12
72
1.13
29748--29804
29
2.0
29
83
13
73
49
7
3
40
1.47
31861--31886
13
2.0
13
100
0
52
61
0
7
30
1.24
32432--32471
21
1.9
21
85
10
55
72
7
10
10
1.28
38926--38996
37
1.9
37
94
0
124
36
16
8
38
1.80
40701--40752
26
2.0
25
81
3
59
57
5
5
30
1.46
45809--45839
11
2.8
11
95
0
53
54
3
16
25
1.56
47379--47593
109
2.0
109
95
0
385
30
10
15
43
1.81
48614--48644
11
2.8
11
95
0
53
58
3
12
25
1.50
51485--52308
322
2.5
322
81
5
924
34
15
16
33
1.90
51253--53875
885
3.0
881
92
1
4391
33
14
16
35
1.89

Tables:   1

The End!