Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020753.1 Corchorus olitorius cultivar O-4 contig20786, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7095

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
536--1034
252
2.0
246
83
7
625
38
17
14
29
1.90
1515--1548
15
2.1
17
89
10
54
52
2
0
44
1.16
1435--1671
118
2.0
118
94
0
420
48
3
5
42
1.44
1449--1630
59
3.1
59
67
15
167
46
4
4
43
1.46
1488--1671
59
3.1
59
66
12
160
51
3
4
40
1.42
1914--1938
11
2.3
11
100
0
50
48
0
24
28
1.52
2681--2728
14
3.5
14
77
11
55
31
10
0
58
1.32
5306--5380
22
3.4
22
79
3
89
37
9
9
44
1.69
5351--5409
29
2.0
29
83
6
75
42
11
10
35
1.76
6580--6631
11
4.7
11
82
0
68
32
13
23
30
1.93
6580--6631
22
2.4
22
100
0
104
32
13
23
30
1.93

Tables:   1

The End!