genome.fa.s20754.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020754.1 Corchorus olitorius cultivar O-4 contig20787, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77598

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--39	2	19.5	2	100	0	78	48	0	0	51	1.00
88--115	14	2.0	14	100	0	56	50	7	7	35	1.57
782--2579	332	5.4	326	79	8	1407	37	15	14	32	1.88
7861--7912	27	1.9	27	96	0	95	48	19	21	11	1.80
14463--14645	83	2.3	80	83	8	223	48	11	15	24	1.78
14722--14800	39	2.0	39	97	0	149	44	8	17	29	1.79
14900--15142	6	42.0	6	70	16	84	18	43	0	37	1.51
14908--15098	30	6.0	30	71	15	107	19	44	0	36	1.51
14922--15112	21	8.8	21	79	12	190	18	45	0	36	1.50
14917--15140	45	4.9	45	77	18	223	19	43	0	37	1.51
15007--15091	36	2.4	36	100	0	170	18	42	0	38	1.51
14982--15140	87	1.8	86	100	0	309	19	42	0	37	1.51
14986--15091	36	3.4	30	78	17	119	18	42	0	38	1.51
14982--15112	57	2.4	53	82	12	144	19	44	0	36	1.51
17482--17529	23	2.1	22	88	11	71	58	0	0	41	0.98
17487--17537	21	2.4	21	81	18	61	58	0	0	41	0.98
20374--22527	332	6.5	331	79	5	2116	36	15	14	33	1.88
27511--27545	18	1.9	18	100	0	70	34	20	22	22	1.97
28410--28452	21	2.0	21	100	0	86	46	0	18	34	1.50
38236--38312	24	3.2	24	88	0	118	23	7	62	6	1.46
38230--38336	48	2.2	46	74	9	115	24	8	57	9	1.57
46908--46938	2	15.5	2	100	0	62	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66639--66788	72	2.1	73	94	1	266	41	19	14	25	1.88
68499--68908	205	2.0	205	100	0	820	42	14	10	31	1.80
69155--69192	19	2.0	20	84	5	51	50	15	2	31	1.58
68704--69747	445	2.3	446	98	0	2027	43	16	11	28	1.83
70216--70245	15	2.0	15	100	0	60	60	0	13	26	1.34
72231--72261	15	2.1	15	93	0	53	64	0	9	25	1.24
73359--73388	15	2.0	15	100	0	60	60	0	13	26	1.34
74456--74486	14	2.1	15	94	5	55	61	0	12	25	1.32
75589--75620	15	2.1	15	100	0	64	62	0	12	25	1.30
77267--77381	39	2.7	42	86	9	164	27	7	43	20	1.80

Tables:   1

The End!