Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020755.1 Corchorus olitorius cultivar O-4 contig20788, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4304
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:364 original size:16 final size:15

Alignment explanation


    Indices: 329--360  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        319 CCTGGAAAAC

                           
        329 AATAAAGAGATATTA
          1 AATAAAGAGATATTA

                           
        344 AATAAAGAGATATTA
          1 AATAAAGAGATATTA

              
        359 AA
          1 AA

        361 ATAACAAAAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25


Consensus pattern (15 bp):   
AATAAAGAGATATTA

Found at i:3039 original size:33 final size:34

Alignment explanation


    Indices: 2995--3071  Score: 95
    Period size: 33  Copynumber: 2.3  Consensus size: 34

       2985 TTTTTAAAAA

                  *       *                    
       2995 AAAAACCTAAAACCGGCGGGAACTTTCCC-GAT-T
          1 AAAAACTTAAAACCAGCGGGAACTTTCCCAG-TGT

                         *  *                 
       3028 AAAAACTTAAAACTAGTGGGAACTTTCCCAGTGT
          1 AAAAACTTAAAACCAGCGGGAACTTTCCCAGTGT

                      
       3062 AAAAACTTAA
          1 AAAAACTTAA

       3072 TGAAATTCTT


Statistics
Matches: 38,  Mismatches: 4, Indels: 3
        0.84            0.09        0.07

Matches are distributed among these distances:
  33   26  0.68
  34   12  0.32

ACGTcount: A:0.42, C:0.21, G:0.16, T:0.22


Consensus pattern (34 bp):   
AAAAACTTAAAACCAGCGGGAACTTTCCCAGTGT
Done.