Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020757.1 Corchorus olitorius cultivar O-4 contig20790, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72956

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18--132
39
2.7
42
86
9
164
27
7
43
20
1.80
319--386
28
2.3
29
78
12
77
32
25
7
35
1.83
814--901
42
2.1
42
100
0
176
26
0
37
36
1.57
7754--7857
35
3.0
35
82
12
144
42
18
3
35
1.68
7822--7957
68
2.0
69
94
1
238
42
15
10
31
1.80
8039--8203
89
1.9
86
90
7
260
40
18
15
26
1.89
9439--9495
29
2.0
29
89
0
87
45
14
10
29
1.78
9771--9803
15
2.2
15
100
0
66
51
18
6
24
1.68
9978--10017
19
2.1
19
85
0
53
70
2
22
5
1.19
28654--28739
30
2.9
30
84
3
111
32
30
10
26
1.90
28990--29056
21
3.0
21
76
16
64
23
35
10
29
1.89
29015--29055
18
2.3
18
91
0
64
21
36
12
29
1.90
28988--29049
12
4.9
12
75
11
52
20
38
9
30
1.85
29308--29349
22
1.9
22
90
0
66
42
21
14
21
1.88
33407--33447
22
2.0
22
90
9
68
46
9
9
34
1.70
42557--42642
43
2.0
43
100
0
172
30
13
16
39
1.87
47583--47612
2
15.0
2
92
0
51
0
46
0
53
1.00
70652--70742
32
2.9
32
82
9
100
35
6
25
32
1.82

Tables:   1

The End!