Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020760.1 Corchorus olitorius cultivar O-4 contig20793, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91032

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
722--754
2
16.5
2
100
0
66
48
0
0
51
1.00
2423--2487
30
2.2
29
81
13
71
40
1
1
56
1.18
4315--4355
21
2.0
21
85
0
55
48
26
12
12
1.75
14138--14185
20
2.4
20
83
13
55
56
8
4
31
1.48
15229--15268
20
2.0
21
85
5
55
62
15
2
20
1.43
17049--17125
31
2.5
31
89
0
118
35
19
9
36
1.84
26320--26414
31
3.1
30
85
5
118
30
15
22
31
1.95
27218--27921
236
3.0
236
97
0
1306
31
12
13
41
1.82
30415--30456
22
1.9
22
85
0
57
45
23
14
16
1.84
40138--40219
34
2.4
33
84
6
110
31
4
15
47
1.67
41800--41846
22
2.1
22
84
7
60
61
2
12
23
1.42
41723--41907
93
2.0
93
91
0
298
52
1
13
32
1.50
41943--42004
31
2.0
31
96
0
115
43
3
20
32
1.68
43239--43300
30
2.2
29
80
8
74
45
3
3
48
1.34
44223--44280
23
2.6
22
78
13
64
41
10
18
29
1.84
44154--44379
22
10.2
21
70
15
118
39
8
15
36
1.78
44432--44491
2
30.5
2
72
3
50
40
3
6
50
1.45
45643--45675
12
2.6
13
85
9
50
12
0
18
69
1.18
45811--45854
2
22.0
2
95
0
79
50
2
0
47
1.13
46790--46888
45
2.2
45
83
1
128
34
4
22
39
1.73
49482--49507
11
2.4
11
100
0
52
7
15
7
69
1.35
51595--51633
2
21.0
2
85
15
57
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53535--53560
2
13.0
2
100
0
52
50
0
0
50
1.00
54635--55756
336
3.3
332
80
6
1156
36
15
14
32
1.89
55939--55971
15
2.1
16
88
5
50
63
12
0
24
1.28
57550--59268
327
5.2
325
79
9
1659
37
15
14
33
1.87
62454--62483
15
1.9
16
93
6
53
53
3
0
43
1.17
62546--62941
201
2.0
203
91
3
656
48
6
7
36
1.59
64204--64235
2
16.0
2
93
0
55
50
3
0
46
1.17
71801--71842
18
2.3
18
87
0
57
54
7
26
11
1.62
73770--73794
3
8.3
3
100
0
50
32
0
0
68
0.90
73880--73953
30
2.7
27
76
13
71
41
18
5
33
1.74
81992--82033
20
2.1
20
100
0
84
42
14
4
38
1.66
88816--88855
3
13.0
3
85
15
55
62
0
0
37
0.95
88816--88855
10
4.3
9
85
14
55
62
0
0
37
0.95
88818--88851
17
2.1
16
94
5
59
61
0
0
38
0.96

Tables:   1

The End!