Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020761.1 Corchorus olitorius cultivar O-4 contig20794, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17739

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--163
60
2.7
59
88
8
256
25
20
19
34
1.96
1--167
31
5.5
30
68
18
105
26
20
19
34
1.96
32--132
29
3.4
29
71
15
107
26
19
19
33
1.96
3314--3373
29
2.0
30
96
3
113
26
20
10
43
1.83
5893--5920
4
7.0
4
100
0
56
25
0
25
50
1.50
8414--8450
5
8.0
5
96
3
53
86
0
13
0
0.57
8489--8627
22
6.3
21
76
12
120
39
10
15
35
1.81
8503--8627
44
2.8
43
84
2
144
39
10
14
36
1.80
8488--8619
66
2.0
66
86
2
185
39
9
15
35
1.80
8502--8636
66
2.0
68
85
5
186
40
11
13
34
1.81
10749--10829
22
3.5
22
69
18
56
38
14
19
27
1.91
11285--11326
21
1.9
22
90
9
68
16
2
19
61
1.44
11784--11813
13
2.4
12
94
5
51
60
0
0
40
0.97
13421--13453
13
2.4
14
90
5
50
21
6
12
60
1.53
16156--16352
40
4.8
40
89
4
279
21
38
17
23
1.93
16226--16292
12
5.2
12
73
19
55
17
35
17
28
1.93
16545--16605
18
3.4
18
95
0
113
6
32
19
40
1.77

Tables:   1

The End!