Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020765.1 Corchorus olitorius cultivar O-4 contig20798, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141912

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1862--1966
54
1.9
54
94
3
185
37
21
9
31
1.86
2185--2226
21
2.0
21
90
9
68
50
33
2
14
1.56
2856--2926
30
2.4
30
78
4
81
45
12
19
22
1.84
4495--4626
31
4.3
31
89
0
183
34
26
23
15
1.95
5161--5190
14
2.1
14
93
0
51
50
0
33
16
1.46
6026--6076
3
17.3
3
82
11
61
72
0
0
27
0.85
7945--8017
31
2.4
31
100
0
146
20
20
15
43
1.87
8253--8278
13
2.0
13
100
0
52
84
0
0
15
0.62
9122--9339
109
2.0
109
96
0
400
43
14
11
31
1.80
9874--9917
22
2.0
22
86
8
63
40
13
4
40
1.65
10022--10078
22
2.6
22
91
5
89
36
14
8
40
1.76
10044--10125
22
3.7
22
77
3
65
36
15
12
35
1.85
10165--10233
22
3.1
22
87
0
93
37
15
10
36
1.82
10171--10801
44
14.4
44
67
16
224
35
16
8
40
1.78
10222--10279
23
2.5
23
91
0
89
43
17
5
34
1.71
10390--10803
22
18.8
22
67
19
129
34
15
8
41
1.78
10195--10755
66
8.6
62
69
16
213
35
16
8
40
1.78
10718--10758
21
1.9
22
90
5
66
36
7
7
48
1.59
11631--11893
99
2.6
100
93
3
449
46
5
12
34
1.65
16735--16768
18
2.0
16
88
11
50
0
11
0
88
0.52
16738--16766
13
2.3
13
94
5
51
0
10
0
89
0.48
23362--23411
16
2.8
18
79
17
59
64
14
0
22
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32086--34653
331
7.8
332
84
4
3186
36
15
14
33
1.88
34636--34667
2
15.5
2
93
6
55
46
0
3
50
1.17
34744--35564
331
2.5
331
81
6
888
37
14
13
33
1.86
37247--37281
11
3.2
11
83
0
52
77
17
5
0
0.96
43249--43312
31
2.1
31
100
0
128
26
6
28
39
1.80
43280--43424
50
2.8
51
83
15
199
28
7
26
37
1.84
45894--46061
31
5.6
29
68
16
101
34
20
17
27
1.95
45898--46060
60
2.7
60
92
0
263
35
20
17
26
1.95
46132--46352
29
7.4
29
65
15
110
28
19
19
32
1.96
46101--46382
60
4.7
60
94
0
483
27
18
19
34
1.95
77832--77909
29
2.7
29
89
2
120
19
25
15
39
1.91
81445--81479
2
17.5
2
100
0
70
48
0
0
51
1.00
84018--84060
3
13.7
3
83
9
50
62
2
34
0
1.08
90819--90848
12
2.4
12
94
5
51
23
26
10
40
1.86
94358--94434
31
2.5
32
91
4
122
22
7
27
42
1.80
98323--98394
29
2.4
29
83
2
90
54
16
9
19
1.70
102140--102175
13
2.7
13
91
4
54
41
19
5
33
1.75
110760--110804
23
2.0
23
95
0
81
28
33
17
20
1.95
124038--124063
2
13.0
2
100
0
52
50
0
0
50
1.00
140874--140934
32
1.9
32
86
0
86
45
9
9
34
1.70

Tables:   1

The End!