Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020767.1 Corchorus olitorius cultivar O-4 contig20800, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44493

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10042--10186
45
3.0
45
80
14
182
38
15
10
35
1.82
10109--10141
13
2.6
13
95
4
59
42
9
9
39
1.68
10064--10193
53
2.3
55
83
10
158
39
15
10
35
1.81
14694--14730
12
3.1
12
96
0
65
0
29
0
70
0.88
29971--29996
13
2.0
13
100
0
52
46
15
0
38
1.46
30045--30111
32
2.1
32
97
0
125
47
0
13
38
1.43
34971--35008
7
5.4
7
100
0
76
57
13
0
28
1.36
34947--35008
21
3.1
21
81
9
76
54
9
0
35
1.33
39060--39177
59
2.0
59
94
0
209
36
27
16
20
1.93
39733--39828
52
1.9
47
87
8
129
30
17
9
42
1.81
42422--42500
22
3.5
22
77
5
79
43
8
7
40
1.64
42418--42568
22
6.8
22
69
13
78
41
11
7
39
1.70
42445--42575
22
6.0
23
72
11
80
39
13
6
39
1.72

Tables:   1

The End!