Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002077.1 Corchorus olitorius cultivar O-4 contig02077, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1050
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26


Found at i:245 original size:16 final size:17

Alignment explanation


    Indices: 219--250  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

        209 AGTGCAAATT

                             
        219 AAAATAGAAAAATAAAG
          1 AAAATAGAAAAATAAAG

                            
        236 AAAA-AGAAAAATAAA
          1 AAAATAGAAAAATAAA

        251 ACGCAATCTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.81, C:0.00, G:0.09, T:0.09


Consensus pattern (17 bp):   
AAAATAGAAAAATAAAG

Found at i:484 original size:12 final size:13

Alignment explanation


    Indices: 461--490  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

        451 ACTAGTAATT

                         
        461 AAAATCAATCAAG
          1 AAAATCAATCAAG

                         
        474 AAAAT-AATCAAG
          1 AAAATCAATCAAG

                 
        486 AAAAT
          1 AAAAT

        491 TAAAGAAAAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.71
  13    5  0.29

ACGTcount: A:0.67, C:0.10, G:0.07, T:0.17


Consensus pattern (13 bp):   
AAAATCAATCAAG
Done.