Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020770.1 Corchorus olitorius cultivar O-4 contig20803, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26868

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2876--2931
28
2.0
28
100
0
112
57
3
35
3
1.34
4907--4943
18
2.1
17
90
5
56
40
24
21
13
1.89
5326--5378
27
2.0
27
84
0
70
33
20
26
18
1.96
11420--11541
38
3.1
38
75
18
142
41
2
7
48
1.44
11395--11541
79
1.9
79
98
1
287
42
2
6
47
1.44
13077--13138
29
2.1
29
96
0
115
20
14
30
33
1.93
13163--13259
48
2.0
48
97
0
185
34
21
12
31
1.91
15639--15754
37
3.1
37
85
9
146
35
22
12
30
1.90
15655--15772
40
3.0
40
85
8
147
38
17
13
30
1.89
17491--17560
29
2.4
29
90
4
106
20
20
15
44
1.87
17491--17584
29
3.1
29
83
10
91
21
25
13
39
1.90
18841--18877
16
2.3
16
90
0
56
40
2
0
56
1.13
20357--20382
13
2.0
13
100
0
52
38
15
7
38
1.76
24745--24821
36
2.1
36
100
0
154
31
15
11
41
1.83

Tables:   1

The End!