Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020771.1 Corchorus olitorius cultivar O-4 contig20804, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14358
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:690 original size:12 final size:12

Alignment explanation


    Indices: 663--697  Score: 61
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        653 TAGCGAAGGT

                         
        663 TTGATTTGATTGA
          1 TTGATTTGA-TGA

                        
        676 TTGATTTGATGA
          1 TTGATTTGATGA

                      
        688 TTGATTTGAT
          1 TTGATTTGAT

        698 ACTGCTGCTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  12   13  0.59
  13    9  0.41

ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54


Consensus pattern (12 bp):   
TTGATTTGATGA

Found at i:14160 original size:67 final size:67

Alignment explanation


    Indices: 14048--14183  Score: 245
    Period size: 67  Copynumber: 2.0  Consensus size: 67

      14038 CTGCTTAACC

                         *                          *                        
      14048 AAATTAAGAGTACGAGACCTAAATTGCGCATTTTCGCATATGTTAGGGCCTTATTTAATCAAATT
          1 AAATTAAGAGTACAAGACCTAAATTGCGCATTTTCGCATACGTTAGGGCCTTATTTAATCAAATT

              
      14113 AA
         66 AA

                                                            *                
      14115 AAATTAAGAGTACAAGACCTAAATTGCGCATTTTCGCATACGTTAGGGTCTTATTTAATCAAATT
          1 AAATTAAGAGTACAAGACCTAAATTGCGCATTTTCGCATACGTTAGGGCCTTATTTAATCAAATT

              
      14180 AA
         66 AA

              
      14182 AA
          1 AA

      14184 CATGGGTCCT


Statistics
Matches: 66,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  67   66  1.00

ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32


Consensus pattern (67 bp):   
AAATTAAGAGTACAAGACCTAAATTGCGCATTTTCGCATACGTTAGGGCCTTATTTAATCAAATT
AA
Done.