Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020774.1 Corchorus olitorius cultivar O-4 contig20807, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39420

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11061--11182
61
2.0
62
93
4
212
37
11
19
31
1.87
23457--23551
45
2.0
46
88
6
138
36
12
6
44
1.68
23641--23677
19
1.9
19
88
0
56
29
13
10
45
1.77
26526--26561
18
2.0
18
100
0
72
27
16
27
27
1.97
27768--28660
322
2.8
318
85
5
1129
35
18
15
31
1.91
28747--28775
2
14.5
2
100
0
58
51
0
0
48
1.00
29191--30415
325
3.7
324
77
7
931
35
15
14
33
1.89
29921--30980
565
1.9
555
82
5
1346
36
16
13
33
1.87
36875--38109
323
3.8
316
76
12
987
33
14
15
35
1.89
37455--38082
334
1.9
338
81
7
767
32
15
16
36
1.90
38576--39412
324
2.6
324
86
4
1170
31
16
17
35
1.92

Tables:   1

The End!