Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020776.1 Corchorus olitorius cultivar O-4 contig20809, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47066

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
287--928
236
2.7
239
89
3
919
33
12
14
39
1.84
523--1821
559
2.3
563
87
4
1842
34
13
15
36
1.87
1325--2154
326
2.5
325
83
5
965
35
14
15
33
1.89
8815--8847
16
2.1
16
88
11
50
81
3
15
0
0.80
14097--14257
81
2.0
79
95
2
286
33
19
10
36
1.86
14202--14397
100
2.0
98
93
3
340
43
15
7
33
1.75
22131--22189
31
1.9
31
85
0
82
42
22
3
32
1.70
22361--22397
2
18.5
2
100
0
74
48
0
0
51
1.00
23378--23409
13
2.5
13
94
0
55
21
6
21
50
1.71
23413--23454
12
3.8
12
75
18
54
21
0
9
69
1.17
26190--26235
24
1.9
24
95
0
83
32
8
23
34
1.86
27944--28002
30
1.9
31
86
3
84
37
15
18
28
1.91
29295--29323
15
1.9
15
100
0
58
51
13
13
20
1.75
34372--34414
18
2.4
18
92
0
68
20
13
27
37
1.91
36283--36311
2
14.5
2
100
0
58
51
48
0
0
1.00
36311--36337
2
13.5
2
100
0
54
51
0
0
48
1.00
45699--45847
39
3.9
39
91
1
232
20
18
34
26
1.95

Tables:   1

The End!