Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020777.1 Corchorus olitorius cultivar O-4 contig20810, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17063

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
339--1585
322
3.9
321
84
2
1436
36
18
14
30
1.91
2782--3842
569
1.9
555
84
5
1427
36
15
14
34
1.88
3337--4169
323
2.5
326
85
4
1027
34
16
14
34
1.89
4598--4658
30
2.1
30
84
3
79
62
6
8
22
1.47
5601--5678
29
2.6
30
83
2
104
17
25
14
42
1.87
5833--5902
30
2.4
30
82
2
88
45
7
25
21
1.77
5846--5910
29
2.2
30
77
2
69
46
12
20
21
1.83
8322--8424
51
2.0
50
81
9
120
21
19
13
45
1.84
11053--11139
42
2.1
42
93
0
147
36
16
26
20
1.93
12036--12073
18
2.2
18
86
9
53
26
15
15
42
1.87
16906--16935
15
1.9
16
93
6
53
46
3
3
46
1.35

Tables:   1

The End!