genome.fa.s20779.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020779.1 Corchorus olitorius cultivar O-4 contig20812, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112636

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2043--2176	67	2.0	65	88	2	196	32	26	4	36	1.76
2989--3129	71	2.0	71	95	0	255	27	24	24	22	2.00
5327--5514	98	1.9	95	84	7	245	37	13	11	37	1.80
7174--7344	85	2.0	85	91	0	279	51	2	14	31	1.56
7372--7437	31	2.3	28	84	10	80	48	9	18	24	1.76
7380--7441	31	2.0	31	93	0	106	43	8	20	27	1.80
9005--9108	31	3.4	31	68	10	88	25	17	20	37	1.93
9006--9168	60	2.7	60	86	3	222	26	18	19	34	1.95
9212--9260	22	2.2	22	85	7	64	28	14	4	53	1.59
9397--9471	22	3.4	22	75	3	62	36	12	13	38	1.82
9423--9523	22	4.5	22	82	7	105	39	14	7	37	1.76
9423--9547	22	5.7	21	79	10	83	37	16	8	37	1.79
11157--11246	47	1.9	47	100	0	180	65	6	14	13	1.45
14200--14229	15	1.9	16	93	6	53	40	16	0	43	1.48
15278--15329	25	2.1	24	85	3	68	30	7	3	57	1.45
16543--16574	16	2.1	16	94	5	57	53	12	0	34	1.39
17768--17796	13	2.2	13	100	0	58	20	17	6	55	1.65
19772--19940	59	2.8	59	84	4	207	28	18	17	34	1.94
19967--20023	21	2.6	22	86	2	80	29	10	7	52	1.62
20005--20347	22	15.8	22	69	15	178	37	16	9	35	1.82
20186--20309	45	2.8	44	81	11	128	38	16	8	37	1.78
28549--28575	10	2.7	10	100	0	54	92	0	7	0	0.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32170--32228	29	2.0	29	96	0	109	33	11	32	22	1.90
44715--44835	60	2.0	60	98	0	233	26	4	33	35	1.78
64132--64208	37	2.1	37	95	0	136	36	24	18	20	1.95
94861--95014	77	2.0	77	90	0	245	19	19	14	46	1.83
99157--99194	20	1.9	20	88	0	58	21	13	15	50	1.78
102009--102033	11	2.3	11	100	0	50	20	8	16	56	1.65
107591--107615	5	5.0	5	100	0	50	40	0	0	60	0.97

Tables:   1

The End!