Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020782.1 Corchorus olitorius cultivar O-4 contig20815, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 141183
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:2063 original size:335 final size:322
Alignment explanation
Indices: 1370--2114 Score: 865
Period size: 323 Copynumber: 2.3 Consensus size: 322
1360 CTATTTACGT
* * *
1370 ATTTGTTTTAT-CGAGCATCTGAAT-CTGTTTCAATTTAATTAAAAATTAATTCGGAAAAAATAG
1 ATTTGTTTTATACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAG
* * * * * *
1433 AAAAACGATATTAGAAGCGTGAAAAGTCCGTCAATCTTTTTGACATTGAATTAAATATTTTTTCT
66 AAAAATGATATTAAAAGCGTGAAAAGACCATCAATATTTTTGACATTGAATTAAATATTTTTTAT
**** * * *
1498 GAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAGTCGAAATCGTGTATTA
131 GAGTATTGTGGCAAAAAATTGAGAAAAAAAAAATCCGATCAGTTTTTAGCCGAAATCGTATAGTA
*
1563 ATCATCACGGTTTTCGGCTAAAAACGCGTTCCCGAGCCCCGATTCAATTTTACATGATTTTTGGC
196 ACCATCACGGTTTTCGGCTAAAAACGCGTTCCCGAGCCCCGATTCAATTTTACATGATTTTTGGC
*
1628 GCAAAGACTCCTTAAAATACCTATATTCATCAAACCAAATATCAGCCACATTGGATATAAGG
261 GCAAAGACTCCTTAAAATACCTATATTCATCAAACCAAATATCAGCCACATTAGATATAAGG
*
1690 ATTTGTTTT-TACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTTGGAAAATAATT
1 ATTTGTTTTATACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCGGAAAA-AA-T
* * *** *
1754 GGAAAAATGATATTAAAAGTGTGAAAAGACCATCAATATTTTTGGTGTTGAATTATATATTTTTT
64 AGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATATTTTTGACATTGAATTAAATATTTTTT
* *** * *
1819 ATGAGTATTGTGGCAAAATATTTTTTTAAAAAAAAAATCGGGTCAGTTTTTAGCCGAAAATCGTA
129 ATGAGTATTGTGGCAAAA-A-ATTGAGAAAAAAAAAATCCGATCAGTTTTTAGCCG-AAATCGTA
* * ** * * *
1884 TAGTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCCCG-TCTCAGTTTTTCATGA
191 TAGTAACCATCACGG-TTTTCGGCTAAAAACGCG-TTCCCGAGCCCCGAT-TCAATTTTACATGA
* * * *
1948 TTTTTGGCAG-AAAGACTCTTTGAAATATCTATATTCATCTAACCAATCATAGGCTCTCAGCCAC
253 TTTTTGGC-GCAAAGACTCCTTAAAATACCTATATTCATCAAACCAA--ATA-----TCAGCCAC
2012 ATTAGAT-TAAAGG
310 ATTAGATAT-AAGG
* *
2025 ATTT-TTTTATACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATAAACTCGGAAAAAAATA
1 ATTTGTTTTATACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCGG-AAAAAATA
* *
2089 GAAAAATGATATTTAAAGCGAGAAAA
65 GAAAAATGATATTAAAAGCGTGAAAA
2115 TATTTCAATT
Statistics
Matches: 355, Mismatches: 49, Indels: 28
0.82 0.11 0.06
Matches are distributed among these distances:
319 1 0.00
320 22 0.06
321 30 0.08
322 2 0.01
323 72 0.20
324 1 0.00
325 24 0.07
326 19 0.05
327 18 0.05
328 62 0.17
329 1 0.00
330 3 0.01
334 29 0.08
335 67 0.19
336 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (322 bp):
ATTTGTTTTATACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAG
AAAAATGATATTAAAAGCGTGAAAAGACCATCAATATTTTTGACATTGAATTAAATATTTTTTAT
GAGTATTGTGGCAAAAAATTGAGAAAAAAAAAATCCGATCAGTTTTTAGCCGAAATCGTATAGTA
ACCATCACGGTTTTCGGCTAAAAACGCGTTCCCGAGCCCCGATTCAATTTTACATGATTTTTGGC
GCAAAGACTCCTTAAAATACCTATATTCATCAAACCAAATATCAGCCACATTAGATATAAGG
Found at i:2104 original size:881 final size:879
Alignment explanation
Indices: 228--2630 Score: 3515
Period size: 881 Copynumber: 2.7 Consensus size: 879
218 GATTTTTCCG
** *
228 ATCATAGGCTCTCAGCCACATTTTATTAAAGGATTTGTTTATACGAGCATCTGAATATTGTTTCG
1 ATCATAGGCTCTCAGCCACATTAGATTAAAGGATTTTTTTATACGAGCATCTGAATATTGTTTCG
*
293 ATTTAATTAGAAATAGACTCTGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAATATTTCAA
66 ATTTAATTAGAAATAGACTCGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAATATTTCAA
**
358 TTTTTTTTGTGTTGAATTGTGTATTTTTGCCGAAAATATTTTTTTTTTGTTTTGGCATGATTTTT
131 TTTTTTTTGCATTGAATTGTGTATTTTTGCCGAAAATA--TTTTTTTTGTTTTGGCATGATTTTT
* *
423 GACGTAAATACTCCTAGAAATATCTATATTCATCGAACAAAATCCCTGCCATGTTCGATTTAAGT
194 GACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCTGCCATGTTCTATTTAAGT
* *
488 ATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAGTTTGGAAAAAATGGA
259 ATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAATTTGGAAAAAATAGA
553 AAAACGATATTAGAAGCATGAAAAGGCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCAG
324 AAAACGATATTAGAAGCATGAAAA-GCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCAG
* * *
618 AGTATTGTAGCAAAAAATTGAGTAGAAACTTTTCCGATCAGTTTTTAGCCGAAATCGTGTACTAA
388 AGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAGCCGAAATCGTGTACTAA
* *
683 TCATCACGGTTTTTGGCTAAAAATGCGTTCCCGAGCCCCGACTCAATTTTGCATGATTTTTGGCG
453 TCATCACGGTTTTCGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATTTTGCATGATTTTTGGCG
* * *
748 CAAAGACTCCTTGAAATATCTATATTCATTAAACCAAATGTCAGCCACACTGGATATAAGGATTT
518 CAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATATCAGCCACATTGGATATAAGGATTT
* *
813 GTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTAATTTGGAAAAAAATTGGAAA
583 GTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTTGGAAAAAAATTGGAAA
*
878 ATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTATATATTTTTTCAGAGT
648 ATGATATTAAAAGCGTGAAAAGACCATCAATATTTTTGGTGTTGAATTATATATTTTTTCAGAGT
* *
943 ATTGTGGAAAAAATTCAGAAAAAAAAATTCGGGTCAGTTTTTAGCCGTAAAATTCGTGTACTAAC
713 ATTGTGGAAAAAATTCAGAAAAAAAAAATCGGGTCAGTTTTTAGCCGTAAAATTCGTATACTAAC
*
1008 CATCATGGTTTTTGAGGTAAAAACGTGTTTCGGGGGCCCGGCTCAGTTTTGCATGATTTTTGCCA
778 CATCATGGTTTTTGAGGTAAAAACGCGTTTCGGGGGCCCGGCTCAGTTTTGCATGATTTTTGCCA
*
1073 GTATAGACTTCTTGAAATATCTATATTCATCTAACCA
843 GTAAAGACTTCTTGAAATATCTATATTCATCTAACCA
* *
1110 ATC-TCAGACTCTCAGCCACATTAGATTTAAGGATTTGTTTT-TACGAGCATCTGAATATTGTTT
1 ATCAT-AGGCTCTCAGCCACATTAGATTAAAGGATTT-TTTTATACGAGCATCTGAATATTGTTT
*
1173 CGATTTAATTAGAAATAGATTCGGGGAAAAAAATAGAAAAATGATATTTAAAGCGAGGAAAATAT
64 CGATTTAATTAGAAATAGACTC--GGAAAAAAATAGAAAAATGATATTTAAAGCGA-GAAAATAT
* * *
1238 TTCAATTTTTTTTGCATTAAATTGTGTATTTTTGCCGAAAATA-TATTTTTGTTTTTGCATGATT
126 TTCAATTTTTTTTGCATTGAATTGTGTATTTTTGCCGAAAATATTTTTTTTGTTTTGGCATGATT
* * *
1302 TTTGACTTAAATAATCCTTGAAATAT-TCATATTCATCGAACAAAAT-CCTAGCCACGTTCTATT
191 TTTGACGTAAATACTCCTTGAAATATCT-ATATTCATCGAACAAAATCCCT-GCCATGTTCTATT
* *
1365 TACGTATTTG-TTTTATCGAGCATCTGAATC-TGTTTCAATTTAATTAAAAATTAATTCGGAAAA
254 TAAGTATTTGTTTTTA-CGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAATTTGGAAAA
* * * *
1428 AATAGAAAAACGATATTAGAAGCGTGAAAAGTCCGTCAATCTTTTTGACATTGAATTAAATATTT
318 AATAGAAAAACGATATTAGAAGCATGAAAAG-CCGTCAATCTTTTTGGCGTTGAATTATATATTT
* *
1493 TTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAGTCGAAATCGTG
382 TTTCAGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAGCCGAAATCGTG
* * *
1558 TATTAATCATCACGGTTTTCGGCTAAAAACGCGTTCCCGAGCCCCGATTCAATTTTACATGATTT
447 TACTAATCATCACGGTTTTCGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATTTTGCATGATTT
* *
1623 TTGGCGCAAAGACTCCTTAAAATACCTATATTCATCAAACCAAATATCAGCCACATTGGATATAA
512 TTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATATCAGCCACATTGGATATAA
*
1688 GGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTTGGAAAATAAT
577 GGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTTGGAAAAAAAT
*
1753 TGGAAAAATGATATTAAAAGTGTGAAAAGACCATCAATATTTTTGGTGTTGAATTATATATTTTT
642 TGG-AAAATGATATTAAAAGCGTGAAAAGACCATCAATATTTTTGGTGTTGAATTATATATTTTT
* ***
1818 T-ATGAGTATTGTGGCAAAATATTTTTTTAAAAAAAAAATCGGGTCAGTTTTTAGCCG-AAAA-T
706 TCA-GAGTATTGTGG-AAAA-A-ATTCAGAAAAAAAAAATCGGGTCAGTTTTTAGCCGTAAAATT
* * *
1880 CGTATAGTAACCATCATGGTTTTTG-GGCTAAAAACGCGTTTCGGGGGCCCCGTCTCAGTTTTTC
767 CGTATACTAACCATCATGGTTTTTGAGG-TAAAAACGCGTTTCGGGGG-CCCGGCTCAGTTTTGC
*
1944 ATGATTTTTGGCAG-AAAGAC-TCTTTGAAATATCTATATTCATCTAACCA
830 ATGATTTTTGCCAGTAAAGACTTC-TTGAAATATCTATATTCATCTAACCA
1993 ATCATAGGCTCTCAGCCACATTAGATTAAAGGATTTTTTTATACGAGCATCTGAATATTGTTTCG
1 ATCATAGGCTCTCAGCCACATTAGATTAAAGGATTTTTTTATACGAGCATCTGAATATTGTTTCG
*
2058 ATTTAATTAGAAATAAACTCGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAATATTTCAA
66 ATTTAATTAGAAATAGACTCGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAATATTTCAA
2123 TTTTTTTTTGCGA-TGAATTGTGTATTTTTGCCGAAAATATTTTTTTTTGTTTTGGCATGATTTT
131 -TTTTTTTTGC-ATTGAATTGTGTATTTTTGCCGAAAATA-TTTTTTTTGTTTTGGCATGATTTT
* *
2187 TGACGTAAATACTCCTTGAAATATCTATATTCATTGAACAAAATCCCTGCCATGTTCTACTTAAG
193 TGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCTGCCATGTTCTATTTAAG
* *
2252 TATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTAATTTGGAAAAAAATT
258 TATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAATTTGG-AAAAAATA
* * * * * *
2317 GGAAAATGATATTAAAAGCATGAAAAGACATCAATCTTTTTGGTGTTGAATTATATATTTTTTCA
322 GAAAAACGATATTAGAAGCATGAAAAGCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCA
* *** * * *
2382 GAGTATTGTGG-AAAAAATTCAGAAAAGAA-AAATCGGGTCTGTTTTTAGCCGAAAATCGTGTAC
387 GAGTATTGTGGCAAAAAATTGAGAAAA-AACTTTTCCGATCAGTTTTTAGCCG-AAATCGTGTAC
* * * * * *** * * *
2445 TAACCATCATGGTTTTTGGGGTAAAAACGTGTTTTGGGGGCCCCGGCTCAGTTTTGCATGATTTT
450 TAATCATCACGG-TTTTCGGCTAAAAACGCG-TTCCCGAGCCCCGACTCAATTTTGCATGATTTT
* * * * * * *
2510 TGCCAGTATAGACTTCTTGAAATATCTATATTCATCTAACCAATCTCAGACTCTCAGCCACATTA
513 TGGC-GCAAAGACTCCTTGAAATATCTATATTCATC--A--AA-C-CA-AATATCAGCCACATTG
* *
2575 GATTTAAGGATTTATTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAAT
570 GATATAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAAT
2631 AGATTCGGGG
Statistics
Matches: 1364, Mismatches: 117, Indels: 68
0.88 0.08 0.04
Matches are distributed among these distances:
880 14 0.01
881 412 0.30
882 247 0.18
883 277 0.20
884 164 0.12
885 123 0.09
886 28 0.02
887 26 0.02
889 1 0.00
891 2 0.00
892 1 0.00
893 2 0.00
894 67 0.05
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37
Consensus pattern (879 bp):
ATCATAGGCTCTCAGCCACATTAGATTAAAGGATTTTTTTATACGAGCATCTGAATATTGTTTCG
ATTTAATTAGAAATAGACTCGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAATATTTCAA
TTTTTTTTGCATTGAATTGTGTATTTTTGCCGAAAATATTTTTTTTGTTTTGGCATGATTTTTGA
CGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCTGCCATGTTCTATTTAAGTAT
TTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAATTTGGAAAAAATAGAAA
AACGATATTAGAAGCATGAAAAGCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCAGAGT
ATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAGCCGAAATCGTGTACTAATCA
TCACGGTTTTCGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATTTTGCATGATTTTTGGCGCAA
AGACTCCTTGAAATATCTATATTCATCAAACCAAATATCAGCCACATTGGATATAAGGATTTGTT
TTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTTGGAAAAAAATTGGAAAATG
ATATTAAAAGCGTGAAAAGACCATCAATATTTTTGGTGTTGAATTATATATTTTTTCAGAGTATT
GTGGAAAAAATTCAGAAAAAAAAAATCGGGTCAGTTTTTAGCCGTAAAATTCGTATACTAACCAT
CATGGTTTTTGAGGTAAAAACGCGTTTCGGGGGCCCGGCTCAGTTTTGCATGATTTTTGCCAGTA
AAGACTTCTTGAAATATCTATATTCATCTAACCA
Found at i:2624 original size:559 final size:558
Alignment explanation
Indices: 1610--3178 Score: 2042
Period size: 558 Copynumber: 2.8 Consensus size: 558
1600 CCCGATTCAA
* * * * * * * *
1610 TTTTACATGATTTTTGGCGCAAAGACTCCTTAAAATACCTATATTCATCAAACCAAATAT-C-AG
1 TTTTGCATGATTTTTGACGTAAATAATCCTTGAAATATCTATATTCATCGAA-CAAA-ATCCTAG
* ** * * *
1673 CCACATTGGA-TATAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAAT
64 CCACGTTCTACT-TAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAAT
* * *
1737 TAATTTGGAAAATAATTGGAAAAATGATATTAAAAGTGTGAAAAGACCATCAATATTTTTGGTGT
128 TAATTTGGAAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGA-CATCAATCTTTTTGGTGT
* *
1802 TGAATTATATATTTTTT-ATGAGTATTGTGGCAAAATATTTTTTTA-AAAAAAAAATCGGGTCAG
192 TGAATTATATATTTTTTCA-GAGTATTGTGGCAAAA-A---ATTCAGAAAAAAAAATCGGGTCAG
* *
1865 TTTTTAGCCGAAAATCGTATAGTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCC
252 TTTTTAGCCGAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCC
* *
1930 CGTCTCAGTTTTTCATGATTTTTGGCAGAAAGAC-TCTTTGAAATATCTATATTCATCTAACCAA
317 CGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTC-TTGAAATATCTATATTCATCTAACCAA
* *
1994 TCAT-AGGCTCTCAGCCACATTAGATTAAAGGATTTTTTTATACGAGCATCTGAATATTGTTTCG
381 TC-TCAGACTCTCAGCCACATTAGATTTAAGGATTTTTTT-TACGAGCATCTGAATATTGTTTCG
2058 ATTTAATTAGAAATAAACTC-GGAAAAAAATAGAAAAATGATATTTAAAGCGA-GAAAATATTTC
444 ATTTAATTAGAAATAAACTCGGGAAAAAAATAGAAAAATGATATTTAAAGCGAGGAAAATATTTC
*
2121 AATTTTTTTTTGCGA-TGAATTGTGTATTTTTGCCGAAAATATTTTTTTTTG
509 AA-TTTTTTTTGC-ATTGAATTGTGTATTTTAGCCGAAAATATTTTTTTTTG
* *
2172 TTTTGGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATTGAACAAAATCCCT-G
1 TTTT-GCATGATTTTTGACGTAAATAATCCTTGAAATATCTATATTCATCGAACAAAAT-CCTAG
*
2236 CCATGTTCTACTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATT
64 CCACGTTCTACTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATT
*
2301 AATTTGGAAAAAAATTGG-AAAATGATATTAAAAGCATGAAAAGACATCAATCTTTTTGGTGTTG
129 AATTTGGAAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACATCAATCTTTTTGGTGTTG
*
2365 AATTATATATTTTTTCAGAGTATTGTGG-AAAAAATTCAGAAAAGAAAAATCGGGTCTGTTTTTA
194 AATTATATATTTTTTCAGAGTATTGTGGCAAAAAATTCAGAAAA-AAAAATCGGGTCAGTTTTTA
* * * *
2429 GCCGAAAATCGTGTACTAACCATCATGGTTTTTGGGGTAAAAACGTGTTTTGGGGGCCCCGGCTC
258 GCCGAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCCCGACTC
* *
2494 AGTTTTGCATGATTTTTGCCAGTATAGACTTCTTGAAATATCTATATTCATCTAACCAATCTCAG
323 AGTTTTGCATGATTTTTGGCAG-AAAGACTTCTTGAAATATCTATATTCATCTAACCAATCTCAG
2559 ACTCTCAGCCACATTAGATTTAAGGATTTATTTTTACGAGCATCTGAATATTGTTTCGATTTAAT
387 ACTCTCAGCCACATTAGATTTAAGGATTT-TTTTTACGAGCATCTGAATATTGTTTCGATTTAAT
* * *
2624 TAGAAATAGATTCGGGGGAAAAAATAGAAAAATGATATTTAAAGCGAGGAAAATATTTCAATTTT
451 TAGAAATAAACTC-GGGAAAAAAATAGAAAAATGATATTTAAAGCGAGGAAAATATTTCAATTTT
*
2689 TTTTGCATTGAATTTTGTATTTTAGCCGAAAATATTTTTTTTTG
515 TTTTGCATTGAATTGTGTATTTTAGCCGAAAATATTTTTTTTTG
2733 TTTTGCATGATTTTTGACGTAAATAATCCTTGAAATATCTATATTCATCGAACAAAATCCTAGCC
1 TTTTGCATGATTTTTGACGTAAATAATCCTTGAAATATCTATATTCATCGAACAAAATCCTAGCC
* * *
2798 ACGTTCTATTTTAGTATTTGTTTTTACGAGCATCTGAATC-TGTTTCAATTTAATTAAAAATTAA
66 ACGTTCTACTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTAA
* * * * * ***
2862 TTCGG--AAAAA-TGGAAAAACGATATTAGAAGCGTGAAAAGTCCGTCAATCTTTTTGACATTGA
131 TTTGGAAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAG-ACATCAATCTTTTTGGTGTTGA
* * * *** * *
2924 ATTAAATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAG
195 ATTATATATTTTTTCAGAGTATTGTGGCAAAAAATTCAGAAAAAA-AAATCGGGTCAGTTTTTAG
* * * ** *
2989 CCG-AAATCGTGTATTAATCATCACGGTTTTT-GGCTAAAAACGCG-TTCCCGAGCCCCGACTCA
259 CCGAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCCCGACTCA
* * * * *
3051 ATTTTGCATGATTTTTGGC-GCAAAGTCTCCTTAAAATACCTATATTCATC--A--AA-C-CA-A
324 GTTTTGCATGATTTTTGGCAG-AAAGACTTCTTGAAATATCTATATTCATCTAACCAATCTCAGA
* * * *
3108 ATATCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATT
388 CTCTCAGCCACATTAGATTTAAGGATTT-TTTTTACGAGCATCTGAATATTGTTTCGATTTAATT
*
3173 GGAAAT
452 AGAAAT
3179 TAATTTAAAA
Statistics
Matches: 900, Mismatches: 86, Indels: 56
0.86 0.08 0.05
Matches are distributed among these distances:
548 66 0.07
549 2 0.00
550 1 0.00
551 2 0.00
553 1 0.00
555 25 0.03
556 36 0.04
557 42 0.05
558 168 0.19
559 166 0.18
560 103 0.11
561 126 0.14
562 46 0.05
563 115 0.13
564 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37
Consensus pattern (558 bp):
TTTTGCATGATTTTTGACGTAAATAATCCTTGAAATATCTATATTCATCGAACAAAATCCTAGCC
ACGTTCTACTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTAA
TTTGGAAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACATCAATCTTTTTGGTGTTGAA
TTATATATTTTTTCAGAGTATTGTGGCAAAAAATTCAGAAAAAAAAATCGGGTCAGTTTTTAGCC
GAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCCCGACTCAGT
TTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTCATCTAACCAATCTCAGACTC
TCAGCCACATTAGATTTAAGGATTTTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAA
ATAAACTCGGGAAAAAAATAGAAAAATGATATTTAAAGCGAGGAAAATATTTCAATTTTTTTTGC
ATTGAATTGTGTATTTTAGCCGAAAATATTTTTTTTTG
Found at i:3212 original size:23 final size:23
Alignment explanation
Indices: 3168--3212 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
3158 TGTTTCGATT
*
3168 TAATTGGAAATTAATTTAAAAAA
1 TAATTGGAAAATAATTTAAAAAA
*
3191 TAATTGGAAAATGATATTAAAA
1 TAATTGGAAAATAAT-TTAAAA
3213 GCGTGAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (23 bp):
TAATTGGAAAATAATTTAAAAAA
Found at i:3348 original size:322 final size:317
Alignment explanation
Indices: 2733--3508 Score: 848
Period size: 322 Copynumber: 2.4 Consensus size: 317
2723 TTTTTTTTTG
* * * *
2733 TTTTGCATGATTTTTGACGTAAA-TAATCCTTGAAATATCTATATTCATCGAA-CAAA-ATCCTA
1 TTTTGCATGATTTTTGGCG-AAAGT-CTCCTTAAAATATCTATATTCATCAAACCAAATAT-C-A
* * * * * * *
2795 GCCACGTTCTATTTTAGTATTTGTTTTTACGAGCATCTGAAT-CTGTTTCAATTTAATTAAAAAT
62 GCCAC-AT-TATATAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAAT
*** * * * *
2859 TAATTCGGAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGTCCGTCAATCTTTTTGACATTGA
125 TAATTAAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAGACCATCAATATTTTTGACATTGA
* *
2924 ATTAAATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAG
190 ATTAAATATTTTTTATGAGTATTGTGGCAAAAAATTGAGAAAAAAC-ATTCCGATCAGTTTTTAG
* * *
2989 CCGAAATCGTGTATTAATCATCACGGTTTTTGGCTAAAAACGCG-TTCCCGAGCCCCGACTCAA
254 CCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCCCGAGCCCCGACTCAA
*
3052 TTTTGCATGATTTTTGGCGCAAAGTCTCCTTAAAATACCTATATTCATCAAACCAAATATCAGCC
1 TTTTGCATGATTTTTGGCG-AAAGTCTCCTTAAAATATCTATATTCATCAAACCAAATATCAGCC
*
3117 ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTGGAAATTAA
65 ACATT--ATATAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAA
* ***
3182 TTTAAAAAATAATTGG-AAAATGATATTAAAAGCGTGAAAAGACCATCAATATTTTTGGTGTTGA
128 -TTAAAAAA-AA-TGGAAAAACGATATTAAAAGCGTGAAAAGACCATCAATATTTTTGACATTGA
* * * *
3246 ATTATATATTTTTTATGAGTATTGTGGCAAAAAATTTTA-AAAAAA-ATTCGGGTCAGTTTTTAG
190 ATTAAATATTTTTTATGAGTATTGTGGCAAAAAA-TTGAGAAAAAACATTCCGATCAGTTTTTAG
* ** * *
3309 CCGAAAATCGTATACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCCCGTCTCA
254 CCG-AAATCGTATACTAACCATCACGGTTTTT-GGCTAAAAACGCGTTTCCCGAGCCCCGACTCA
*
3374 G
317 A
* * * * * *
3375 TTTTTCATGATTTTTGGCAGAAAGACTCTTTTAAATATCTATATTTATCTAACCAATCATAGGCT
1 TTTTGCATGATTTTTGGC-GAAAGTCTCCTTAAAATATCTATATTCATCAAACCAA--ATA----
*
3440 CTCAGCCACATTATATTAAAGGATTTGTTTATACGAGCATCTGAATATTGTTTCGATTTAATTAG
59 -TCAGCCACATTATA-T-AAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAG
3505 AAAT
121 AAAT
3509 AGACTCGGAA
Statistics
Matches: 385, Mismatches: 49, Indels: 35
0.82 0.10 0.07
Matches are distributed among these distances:
317 1 0.00
318 1 0.00
319 79 0.21
320 45 0.12
321 31 0.08
322 93 0.24
323 67 0.17
324 1 0.00
325 3 0.01
328 3 0.01
329 1 0.00
330 60 0.16
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (317 bp):
TTTTGCATGATTTTTGGCGAAAGTCTCCTTAAAATATCTATATTCATCAAACCAAATATCAGCCA
CATTATATAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTA
AAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAGACCATCAATATTTTTGACATTGAATTAAA
TATTTTTTATGAGTATTGTGGCAAAAAATTGAGAAAAAACATTCCGATCAGTTTTTAGCCGAAAT
CGTATACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCCCGAGCCCCGACTCAA
Found at i:4102 original size:232 final size:236
Alignment explanation
Indices: 3675--4146 Score: 790
Period size: 232 Copynumber: 2.0 Consensus size: 236
3665 TCCCTGCCAT
*
3675 GTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTATTT
1 GTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTATAT
* * * * *
3740 TGGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAGGCCGTCAATCTTTTTGGCGTTGAAT
66 TGCAAAAAAATGGAAAAAACGATATTAGAAGCCTGAAAAGCCCATCAATCTTTTTGACGTTGAAT
* * *
3805 TATATATTTTTTCAGAGTATTGTAGCAAAAAATTGAGTAGAAACTTTTCCGATCAGTTTTTAGCC
131 TATATATTTTTTCAGAGTATTGTAGCAAAAAATTGAGAAAAAACTTTTCCGATAAGTTTTTAGCC
3870 GAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGC
196 GAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGC
*
3911 GTTCGATTTAAGTATTT-TTTTTACGAGCATCTGAATGTTGTTTCAATTTAATTAAAAATTA-AT
1 GTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTATAT
* *
3974 T-CAGAAAAATGG-AAAAACGATATTAGAAGCCTGAAAAGCCCATCAATTTTTTTGACGTTGAAT
66 TGCAAAAAAATGGAAAAAACGATATTAGAAGCCTGAAAAGCCCATCAATCTTTTTGACGTTGAAT
* *
4037 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATAAGTTTTTAGCC
131 TATATATTTTTTCAGAGTATTGTAGCAAAAAATTGAGAAAAAACTTTTCCGATAAGTTTTTAGCC
4102 GAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGC
196 GAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGC
4143 GTTC
1 GTTC
4147 CCGAGCCCCG
Statistics
Matches: 222, Mismatches: 14, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
232 151 0.68
233 9 0.04
234 2 0.01
235 43 0.19
236 17 0.08
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (236 bp):
GTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTATAT
TGCAAAAAAATGGAAAAAACGATATTAGAAGCCTGAAAAGCCCATCAATCTTTTTGACGTTGAAT
TATATATTTTTTCAGAGTATTGTAGCAAAAAATTGAGAAAAAACTTTTCCGATAAGTTTTTAGCC
GAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGC
Found at i:6569 original size:884 final size:881
Alignment explanation
Indices: 4410--8204 Score: 6045
Period size: 884 Copynumber: 4.3 Consensus size: 881
4400 TTGCCAGGTC
* * * *
4410 TATCTATATTCATGTAACCAATCTCAGGCTCTCAACCACATTAGATTTAAGGATTCGTTTCTACG
1 TATCTATATTCATCTAACCAATCTCAGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACG
* *
4475 AGTATCTGAATATTGTTTCGATTTAATTAGAAATAGATTCGGTTAAAAAATAGAAAAATGATATT
66 AGCATCTGAATATTGTTTCGATTTAATTAGAAATAGATTCGG-AAAAAAATAGAAAAATGATATT
** *
4540 TAAAGCGAGAAAATATTTCTTCTTCTTTTTTGCGTTGAATTGTGTATTTTTCGCCAAAAATATTT
130 TAAAGCGAGAAAATATTTC-AATT-TTTTTTGCGTTGAATTGTGTATTTTT-GCCGAAAATATTT
*
4605 TTTTTGTTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCAATATTCATCGAACAAAAT
192 TTTTTGTTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAAT
*
4670 CCCTA-CCATGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTA
257 CCC-AGCCACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTA
* * *
4734 AAAATTAATTCGGAAAAAAATGGAAAAATGATATTAGAAGCGTGAAAAGCCCGTAAAACTTTTTG
321 AAAATTAATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTG
*
4799 GCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAGAAACTTTTCCGATAAG
386 GCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATAAG
*
4864 TTTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTTGCTAAAAACGCGTTCCCGAGCCCCGA
451 TTTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGA
* *
4929 CTCAATTTTGCATGATTTTTGGCGCAAAGACTCTTTGAAATATTTATATTCATCAAACCAAATGT
516 CTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGT
* * * *
4994 CAGCCACATTGGGTATAAGGATTT-TTTTT-CGAGCATTTGAATCTTATTTTC-ATTTAATTAGG
581 CAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTT-GTTTCGATTTAATTAGA
*
5056 AATTAATTC-GAAAATAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATATTTTTGG
645 AATTAATTCGGAAAATAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGG
* *
5120 TGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAATTCGGGTCAGTT
710 TGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAATCGGGTCAATT
* * * *
5185 TTTAGCCGAAAATCGTGTACTTTACCATTATGGTTTTTGGGTTAAAAACGCGTTTCGGGGGCCCC
775 TTTAGCCGAAAATCGTGTACGTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCCC
* * * *
5250 GGCTCAGTCTTGCATGATTTTTGGCAGAAACACTCCTTGAAA
840 GGCTCAGTTTTGCATGATTTTTGCCAAAAAGACTCCTTGAAA
* * *
5292 TATTTATATTTATCTAACTAATCTCAGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACG
1 TATCTATATTCATCTAACCAATCTCAGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACG
* * * *
5357 AGCATCTGAATATTGTTTCAAATTAATTAGAAATATATTCGGAAAAAAATACAAAAATGATATTT
66 AGCATCTGAATATTGTTTCGATTTAATTAGAAATAGATTCGGAAAAAAATAGAAAAATGATATTT
*
5422 AAAGCGAGAAAAATATTTCAATTTTTTTTTTGCGTTGAATTGTGTATTTTTTCCGAAAATA-TTT
131 AAAGCGAG-AAAATATTTCAA--TTTTTTTTGCGTTGAATTGTGTATTTTTGCCGAAAATATTTT
* *
5486 TTTTGTTTTTGCTTGATTTTTGACATAAATACTCCTT-AAGATATCTATATTCATCGAACAAAAT
193 TTTTGTTTTTGCATGATTTTTGACGTAAATACTCCTTGAA-ATATCTATATTCATCGAACAAAAT
* *
5550 CCCAGCCACGTTCGATTTAAGTATTTGTTTTTGCGACCATCTGAATCTTGTTTCAATTTAATTAA
257 CCCAGCCACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAA
*
5615 AAATTAATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGGCCGTCAATCTTTTTGG
322 AAATTAATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGG
* **
5680 CGTTGAATTACATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGACGAAACTTTTCCGATAAGT
387 CGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATAAGT
5745 TTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGAC
452 TTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGAC
5810 TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTC
517 TCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTC
* * *
5875 AGCCACAATGGATAAAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAA
582 AGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* * *
5940 TTAATTCGGAAAA-ATATTGGGAAAATGATGTTAAAAGCGTGAAAATACCATCAATCTTTTTGGT
647 TTAATTCGGAAAATA-ATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGT
6004 GTTGAATTATATATTTTTTCTGAGTATTGTGG-AAAAAATTCAGAAAAGAAAAATCGGGTCAATT
711 GTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAA-AAAAATCGGGTCAATT
* *
6068 TTTAGCCGAAAATCGTGTAC-TAACCATCATGGTTTTTGGGTTAAAAACGCTTTTCGGGGGCCCC
775 TTTAGCCGAAAATCGTGTACGTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCCC
*
6132 GACTCAGTTTTGCATGATTTTTGCCAATAAA-AGCTCCTTGAAA
840 GGCTCAGTTTTGCATGATTTTTGCCAA-AAAGA-CTCCTTGAAA
* *
6175 TATCTATATTCATCGAACCAATCTCAGGCTCTCAGCCACATTAGATTTAAGGATTTCTTTTTACG
1 TATCTATATTCATCTAACCAATCTCAGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACG
*
6240 AGCATCTGAATATTGTTTCGATTTAATTAGAAATAGACTCAGGAAAAAATAATAGAAAAATGATA
66 AGCATCTGAATATTGTTTCGATTTAATTAGAAATAGATTC-GG-AAAAA-AATAGAAAAATGATA
*
6305 TTTAAAGCGAGGAAAATATTTCAATTTTTTTTGCGCTGAATTGTGTATTTTTGCCGAAAATA-TT
128 TTTAAAGCGA-GAAAATATTTCAATTTTTTTTGCGTTGAATTGTGTATTTTTGCCGAAAATATTT
* * *
6369 TTTTTGTTTTTGCATGATTTTTTACGTAAATACTTCTTGAAATATCTATATTCATCAAACAAAAT
192 TTTTTGTTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAAT
* * *
6434 CCCAGCCACGTTCAATTTATGTATTTGTTTTTACGAACATCTGAATCTTGTTTCAATTTAATTAA
257 CCCAGCCACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAA
* * *
6499 AAATTAATTCGGAAAAAAATGGAAAAATGATGA-TAGAAGCGTGAAAAGCCCATTAATCTTTTTG
322 AAATTAATTCGGAAAAAAATGGAAAAACGAT-ATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTG
* * * *
6563 GCGTTGAATTATATGTTTTTTCTGAGTATTGTGGCAAAAAATTTAGGAAAAACTTTTCCGATCAG
386 GCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATAAG
* * * *
6628 TTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTCGCTAAAATCGCGTTCCCGAGCCCCAA
451 TTTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGA
6693 CTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGT
516 CTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGT
* * * *
6758 CAGCTACATTGGATATAAGGATTTGCTTTTACGAGCATCTGAATCTGGTTTTGATTTAATTAGAA
581 CAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
*
6823 ATTAATTCGGAAAATAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCGTTTTGGT
646 ATTAATTCGGAAAATAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGT
* *
6888 GTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAAAATTCA-TAAAAAAAATCGGGTCAGT
711 GTTGAATTATATATTTTTTCTGAGTATTGTGGC--AAAAAATTCAGAAAAAAAAATCGGGTCAAT
*
6952 TTTTAGCCGAAAATCGTGTAC-TAACCATCATGGATTTTGGGCTAAAAACGCGTTTCGGGGGCCC
774 TTTTAGCCGAAAATCGTGTACGTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCC
* *
7016 CGTCTCAGTTTTGCATGATTTTTGCCAGAAAGACTCCTTGAAA
839 CGGCTCAGTTTTGCATGATTTTTGCCAAAAAGACTCCTTGAAA
* *
7059 TATCTATATTCGTCTAACCAATCTGAGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACG
1 TATCTATATTCATCTAACCAATCTCAGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACG
* *
7124 AGCATCTGAATATTGTTTCGATTTAATTTGAAATAGATTCGGAAAAAAATAGAAAAATAATATTT
66 AGCATCTGAATATTGTTTCGATTTAATTAGAAATAGATTCGGAAAAAAATAGAAAAATGATATTT
7189 AAAGCGAGAAATATATTTCAATTCTTTTTTGCGTTGAATTGTGTATTTTTTGCCGAAAATATTTT
131 AAAGCGAGAAA-ATATTTCAATT-TTTTTTGCGTTGAATTGTGTA-TTTTTGCCGAAAATATTTT
**
7254 TTTTGTTTTTGCATGATTTTTGACGTAAATACTTTTTGAAATATCTATATTCATCGAACAAAATC
193 TTTTGTTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATC
* *
7319 TCAGCCACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTTAATCTTGTTTCAATTTAATTAAA
258 CCAGCCACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAA
* *
7384 AATTAATTC-G-AAAAAATGGAAAAACGATATTAGAAGCCTGAAAAGCCCGTCAATTTTTTTGGC
323 AATTAATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGC
* * * *
7447 GTTGAATTATATATTTTTTCTAAGTATTGTAGCAAAAAATTGAGAAAAAACCTTTCCCATAAGTT
388 GTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATAAGTT
*
7512 TTTAGCCGAAATCTTGTAC--AT--T-ACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACT
453 TTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACT
*
7572 CAATTTTGCATTATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCA
518 CAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCA
7637 GCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAAT
583 GCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAAT
* *
7702 TAATTCGGAAAA-AGTTGGATAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGT
648 TAATTCGGAAAATAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGT
*
7766 TGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAAATCAGAAAAAAAAAATCGGGTCAATTTT
713 TGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAG-AAAAAAAAATCGGGTCAATTTT
* *
7831 TAGGCGAAAATCGAT-TACGTTA--ATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGGCCCC
777 TAGCCGAAAATCG-TGTACGTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTC-GGGGGCCCC
* *
7893 GGCTCAGTTTTGCATGATTTTTGCCAGAAAGACTCATTGAAA
840 GGCTCAGTTTTGCATGATTTTTGCCAAAAAGACTCCTTGAAA
7935 TATCTATATTCATCTAACCAATCTCAGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACG
1 TATCTATATTCATCTAACCAATCTCAGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACG
8000 AGCATCTGAATATTGTTTCGATTTAATTAGAAATAGATTCAGG----AAA-A-AAAAATGATATT
66 AGCATCTGAATATTGTTTCGATTTAATTAGAAATAGATTC-GGAAAAAAATAGAAAAATGATATT
*
8059 TAAAGCGAGAAAATATTT-GATTTTTTTTGCGTTGAATTGTGTATTTTTTGCCGAAAATATTTTT
130 TAAAGCGAGAAAATATTTCAATTTTTTTTGCGTTGAATTGTGTA-TTTTTGCCGAAAATATTTTT
** *
8123 TTTGTTTTTGTTTGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCT
194 TTTGTTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCC
*
8188 CAGCCATGTTCGATTTA
259 CAGCCACGTTCGATTTA
8205 CAATTAATAT
Statistics
Matches: 2713, Mismatches: 165, Indels: 84
0.92 0.06 0.03
Matches are distributed among these distances:
868 119 0.04
869 3 0.00
870 6 0.00
871 23 0.01
872 1 0.00
873 3 0.00
874 9 0.00
875 29 0.01
876 266 0.10
877 177 0.07
878 1 0.00
879 3 0.00
880 397 0.15
881 82 0.03
882 393 0.14
883 245 0.09
884 795 0.29
885 111 0.04
886 39 0.01
887 11 0.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (881 bp):
TATCTATATTCATCTAACCAATCTCAGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACG
AGCATCTGAATATTGTTTCGATTTAATTAGAAATAGATTCGGAAAAAAATAGAAAAATGATATTT
AAAGCGAGAAAATATTTCAATTTTTTTTGCGTTGAATTGTGTATTTTTGCCGAAAATATTTTTTT
TGTTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCA
GCCACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAAT
TAATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCGTT
GAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATAAGTTTTT
AGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAA
TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCC
ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
TTCGGAAAATAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGA
ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAATCGGGTCAATTTTTAGC
CGAAAATCGTGTACGTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCCCGGCTCA
GTTTTGCATGATTTTTGCCAAAAAGACTCCTTGAAA
Found at i:8219 original size:12 final size:12
Alignment explanation
Indices: 8202--8227 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8192 CATGTTCGAT
8202 TTACAATTAATA
1 TTACAATTAATA
8214 TTACAATTAATA
1 TTACAATTAATA
8226 TT
1 TT
8228 TTCACTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (12 bp):
TTACAATTAATA
Found at i:26388 original size:81 final size:81
Alignment explanation
Indices: 26253--26409 Score: 219
Period size: 81 Copynumber: 1.9 Consensus size: 81
26243 CCTACCTAAC
* * *
26253 CCCCAGAAGAAGAAAGTCTACAGTACAAACTTTTAACAATAGGCTTAACCATCTTATATCTTCAG
1 CCCCAGAAGAAGAAAGTCTACAGTACAAAATTCTAACAATAGGCTTAACCATCTTATAGCTTCAG
26318 TTTGAATGCTTACCAG
66 TTTGAATGCTTACCAG
* * * *
26334 CCCCAGAAGCAGAAAGTGTACTA-TACAAAATTCTAAGC-ATTGGCTTAATCATCTTATAGCTTC
1 CCCCAGAAGAAGAAAGTCTAC-AGTACAAAATTCTAA-CAATAGGCTTAACCATCTTATAGCTTC
26397 AGTTTGAATGCTT
64 AGTTTGAATGCTT
26410 CCAAGTTACA
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 65 0.97
82 2 0.03
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (81 bp):
CCCCAGAAGAAGAAAGTCTACAGTACAAAATTCTAACAATAGGCTTAACCATCTTATAGCTTCAG
TTTGAATGCTTACCAG
Found at i:35142 original size:13 final size:13
Alignment explanation
Indices: 35121--35156 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
35111 TGAAATTCTT
35121 TTTGACCCTCCAA
1 TTTGACCCTCCAA
*
35134 TTTGTCCCTCCAA
1 TTTGACCCTCCAA
*
35147 CTTGACCCTC
1 TTTGACCCTC
35157 TTAATAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.17, C:0.42, G:0.08, T:0.33
Consensus pattern (13 bp):
TTTGACCCTCCAA
Found at i:57593 original size:2 final size:2
Alignment explanation
Indices: 57586--57616 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
57576 TACGATAGAG
57586 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
57617 GATAGAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:60755 original size:2 final size:2
Alignment explanation
Indices: 60748--60777 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
60738 TTTATATCTT
60748 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60778 AAGGTAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:60793 original size:14 final size:14
Alignment explanation
Indices: 60776--60802 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
60766 TATATATATA
60776 TAAAGGTAATTAAT
1 TAAAGGTAATTAAT
60790 TAAAGGTAATTAA
1 TAAAGGTAATTAA
60803 AAGAAAAGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (14 bp):
TAAAGGTAATTAAT
Found at i:67790 original size:2 final size:2
Alignment explanation
Indices: 67783--67813 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
67773 CATTCAATTA
67783 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67814 AAACTTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76340 original size:28 final size:29
Alignment explanation
Indices: 76298--76353 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
76288 CCGTCAGTCT
*
76298 TCTCTTTCTTCCGCATT-ATTTTTTATAA
1 TCTCTATCTTCCGCATTAATTTTTTATAA
*
76326 TCTCTATCTTTCGCATTAATTTTTTATA
1 TCTCTATCTTCCGCATTAATTTTTTATA
76354 CTTGCATATC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.20, C:0.20, G:0.04, T:0.57
Consensus pattern (29 bp):
TCTCTATCTTCCGCATTAATTTTTTATAA
Found at i:78263 original size:21 final size:19
Alignment explanation
Indices: 78238--78295 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
78228 GCTACTCTAA
78238 TAATCTCATCTGTACAGTACC
1 TAATCTCATCTGTACAGT--C
* *
78259 TAATCTAATCTGTACAGTG
1 TAATCTCATCTGTACAGTC
78278 TAATCTCATCTGTACAGT
1 TAATCTCATCTGTACAGT
78296 TGCTAAAGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.50
21 17 0.50
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36
Consensus pattern (19 bp):
TAATCTCATCTGTACAGTC
Found at i:103610 original size:3 final size:3
Alignment explanation
Indices: 103602--103626 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
103592 AAATGGAAGA
103602 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
103627 TATATATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:106442 original size:161 final size:161
Alignment explanation
Indices: 106176--106493 Score: 503
Period size: 161 Copynumber: 2.0 Consensus size: 161
106166 TCATGAGATA
* ** *
106176 TTGGGTTCTATTCTCATGAAATGTGAGTTTTCTTTATAATTTATTTGTTTGTATATTTAGTATAT
1 TTGGGTTCTACTCTCACAAAATGTGAGTTTTCTATATAATTTATTTGTTTGTATATTTAGTATAT
* * * * *
106241 TGGTAGCTATAGATGGATTTAGAGATTGATTTAGATTTATTTATGTTTCGTAAATAGAGAAGCCA
66 TAGTAGCTATAGATGAAGTTAGAGATTGATATAGATTTATTTACGTTTCGTAAATAGAGAAGCCA
106306 ATGTATTAACACATTCTCTAGCTAAGAGGTC
131 ATGTATTAACACATTCTCTAGCTAAGAGGTC
*
106337 TTGGGTTCTACTCTCACAAAATGTGAGTTTT-TAATATAATTTATTTGTTTGTGTATTTAGTATA
1 TTGGGTTCTACTCTCACAAAATGTGAGTTTTCT-ATATAATTTATTTGTTTGTATATTTAGTATA
* *
106401 TTAGTAGCTATAGATGAAGTTAGAGATTGATATATATTTATTTACGTTTCGTAAATAGGGAAGCC
65 TTAGTAGCTATAGATGAAGTTAGAGATTGATATAGATTTATTTACGTTTCGTAAATAGAGAAGCC
*
106466 AATGTATTAACACATTCTCTAGTTAAGA
130 AATGTATTAACACATTCTCTAGCTAAGA
106494 TTGAGCTAGA
Statistics
Matches: 143, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
160 1 0.01
161 142 0.99
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (161 bp):
TTGGGTTCTACTCTCACAAAATGTGAGTTTTCTATATAATTTATTTGTTTGTATATTTAGTATAT
TAGTAGCTATAGATGAAGTTAGAGATTGATATAGATTTATTTACGTTTCGTAAATAGAGAAGCCA
ATGTATTAACACATTCTCTAGCTAAGAGGTC
Found at i:125594 original size:19 final size:19
Alignment explanation
Indices: 125570--125609 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
125560 CTCCACTATA
125570 TTCCACTATATTTCAAATT
1 TTCCACTATATTTCAAATT
125589 TTCCACTATATTTCAAATT
1 TTCCACTATATTTCAAATT
125608 TT
1 TT
125610 TTAGTGAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (19 bp):
TTCCACTATATTTCAAATT
Found at i:127465 original size:15 final size:16
Alignment explanation
Indices: 127440--127469 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
127430 AATAATTATT
127440 TTTAGATTATAATATA
1 TTTAGATTATAATATA
127456 TTTA-ATTATAATAT
1 TTTAGATTATAATAT
127470 TATTATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTAGATTATAATATA
Found at i:128907 original size:333 final size:329
Alignment explanation
Indices: 127820--132648 Score: 3891
Period size: 333 Copynumber: 14.6 Consensus size: 329
127810 ACACTTTACA
* * * * * * * *
127820 TCATCTAACCAAATCTCAGCAACACTAGATTTAAGAATTTTTTTTTACGAGAATCTGAATCTTAT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * *
127885 TTCGATTTAATTAGAAATTAATTTAGAAAAATAAGAAATACGATATTAAAAGCGTAAAAAGCCCT
66 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATT-AAAGCGTGAAAAGTCCT
* * * *
127950 CCAATCTTTTTGGCGTTGAATTATAGAT-TTTTATGAGTATTTTATCCAAAAATTGAGGAGAAAT
130 CCAATCTTTTTGGCATTGAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAAT
* * * * *
128014 CTTTCGGATCAATTTTTGTAAAATTCTAGCCGAAATCGTGAACTAACAAACCATCAC-GTGTTTT
195 CTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG---T-ACTAACCATCACGGT-TTTT
* * * * * *
128078 GGCTAAAAACGCGTTTCGGGGACCCAGCTCAATTTTGCATGATTTTTGGCTCCGAGACTACTTGA
255 TGCTAAAAACGCGTTTC-GGGACCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGA
*
128143 AATATCTATTT
319 AATATCTATAT
* * * *
128154 TTATCTAATCAAATTTCAGCCACATTGGATTTAATGATTTGTTTTTACGAGCATTTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * ** * * * * *
128219 TTAGAATTAATTAGAAATTAATTTGGAAAAATA-GGAAAATGATATTAGAAACGTCAAAAGCCCT
66 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTA-AAGCGTGAAAAGTCCT
* * * *
128283 TCAATC-TGTTGGCATTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAATAT
130 CCAATCTTTTTGGCATTGAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAAT
* * * ** * * *
128347 CTTTCGGGTCAATTTTTACAAAATTTTAGCCAAAATCGTGTAAGAACCATCACAGTTTTTAGCCA
195 CTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGCTA
* * * * *
128412 AAAAAGCGTTATGGGGCCCCGGCTCAGTTTTGCATGATTTTTGCCGCCAAGACTCCTTGAGATAT
260 AAAACGCGTT-TCGGGACCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATAT
*
128477 CCATAT
324 CTATAT
* * ** ** * *
128483 TCATCTAATAAAATCTTAGCCACATTGGATTTAAAAATTTGTTTTTAAAAGCATCTGAAACCTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * * * *
128548 TTTGATTTAATTGGAAATTAATTCAGAAAAATACGAAAAATGATATTAAGGCATAAAAAGTCCTC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAGCGTGAAAAGTCCTC
* * *
128613 CAATCTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTATCCAAAGATTGAGGAAAAAAT
131 CAATCTTTTTGGCATTGAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGG-AAAAAT
** * * * * *
128678 -TTTTGGGTCTTTTTTTTTTTTGCAAAATTTTAGTCAAAATAGTATACTAACCATCACCGTTTTT
195 CTTTTGGGTC-----AATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT
* * * *
128742 TGCTCAAAACGCGTTTCGGGACCCGGCTCAGTTTTGCAT-ATTTTTTGCGCCGACACTCCTTGAA
255 TGCTAAAAACGCGTTTCGGGACCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAA
* *
128806 ATGTCTATAC
320 ATATCTATAT
* * * *
128816 TCATCTAATAAAATCAT-AGTCACATTGCATTTAAGGATTTATTTTTACGAGCATCTGAATCTTG
1 TCATCTAATCAAATC-TCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * * *
128880 TTTCGATTTAATTAGAAATTGATTCAGAAAAAATATGAAAAACAATATTAAAAGTGTGAAAAGCC
65 TTTCGATTTAATTAGAAATTAATTCAG-AAAAATATGAAAAACGATATT-AAAGCGTGAAAAGTC
* * * *
128945 CTTCAATCTTTTTGGCATTGAATTATATA-ATTTTTATGAGTATTATGGCTAAAAATTGAGGAAA
128 CTCCAATCTTTTTGGCATTGAATTATATATA-TTTTATGAGTATTTTAGCCAAAAATTGAGGAAA
* ** * * * **
129009 TTATCTTTTGGGTCAATTTTTGTGAAATTTTAGCCGAAATCGCGTAATAATCATCACGGTTTTGG
192 -AATCTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTT
* * * * * * *
129074 GCTAAAAACGTG-TTCCGAAGCCCGGTTCAATTTTGAATGATTTTTGGCGCCGAGACTCCTTGAA
256 GCTAAAAACGCGTTTCGGGA-CCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAA
129138 ATATCTATAT
320 ATATCTATAT
* ** ** * *
129148 TCATCTAACCAAA--T---CC-C---------AACCA-TTGTTTTTAAAAGCATCTTAATCATGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
** *
129197 TTCTTTTTTAATTAGAAATTAATTC-G--------G---AA--A-A--AAAG-GATGAAAAGCCC
66 TTC-GATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAGCG-TGAAAAGTCC
* * * * * * * * * *
129244 TTTCAATTTTTTTGGCGTTGAGTTATATATTTTTTATGAGTAATGTGGCTAAAAATTGAGAAAAA
129 -TCCAATCTTTTTGGCATTGAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAG-GAAA
* ** * * *
129309 AATATTTCAGGTCAA-TTTTGCCAAATATTAGCGGAAATCGTG---TAA-CATCACGGTTTTTTG
192 AATCTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGG-TTTTT-
* * * * * *
129369 TGGCTAAAAACGCATTCCGGAATCCCGGGT-AGTTTTGTATGATTTTTGGCGCCAAGACTCCTTA
255 T-GCTAAAAACGCGTTTCGGGA-CCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTG
129433 AAATATCTATAT
318 AAATATCTATAT
* *
129445 TCATCTAATCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTAAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * **
129510 TTCGATTTAATTAAAAATTAATTCGGAAAAAGTAGGAAAAACGATATTAGAAGCGTAAAAAACCC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAA-TATGAAAAACGATATTA-AAGCGTGAAAAGTCC
* * *
129575 TTCAATATTTTTGGCATTGAATTATATAT-TTTTCATGAGTATTTTAGCCAAAAATTGAGGAAAT
129 TCCAATCTTTTTGGCATTGAATTATATATATTTT-ATGAGTATTTTAGCCAAAAATTGAGGAAAA
* * * * * * *
129639 TTCTTTTCGGTCATTTTTTGGAAAATTTTAGCCAAAATCGTGTAATAATCATCACGGTTTTTTGC
193 ATCTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGC
* * * *
129704 TAAAAACGCGTTTCAGGG-CCCTAGG-TCAGTTTTGCATTATTTTTGGCACTAAGACTCCTTGAG
258 TAAAAACGCGTTTC-GGGACCC--GGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAA
* *
129767 ATAACCATAT
320 ATATCTATAT
* * * * *
129777 TCATATAATCAAATCTCAGACACATTGCATTTAAGGATTTGTTCTTACGAACATCTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * *
129842 TTTGATTTAAATAGAAATTAATTC------ATA-AAAAAACGATATAAAAGCGTGAAAAGTCCTC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAGCGTGAAAAGTCCTC
* * ***
129900 CAATCTTTTTGGCATTAAATTATATATATTTCATGAGTATTTTTTTTCAAAAATTGAGGAAAAAT
131 CAATCTTTTTGGCATTGAATTATATATATTTTATGAGTA-TTTTAGCCAAAAATTGAGGAAAAAT
* * * * * * * * * * *
129965 AATTCT-AGTTATTTTTTCCAAAATTTTAGCCGGAATCGCGTATTAACCATCACAGTTTTTTTTC
195 -CTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC-G-GTTTTTTG
* * * * *
130029 CTAAAAATGCGTTTCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCGTCGAGACTCCTTGAAA
257 CTAAAAACGCGTTTC-GGGACCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAA
130094 TATCTATAT
321 TATCTATAT
* * * * *
130103 TCATCTAATCAAGTCTCAGTCACATTGCATTTAAGGATTTGTTTTTACGAGGATCTGAATCTTAT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * **
130168 GTCAATATAATTAGAAATTAATTTAGAAAAATATGAAAAACGATATTAAAAGCGTGCCAAGTCC-
66 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATT-AAAGCGTGAAAAGTCCT
* * * * *
130232 CACAATCTTTTTGG-AGCTGAATTATATATATTTTATGAGTAATTTAGACAGAAATTGAAGAAAA
130 C-CAATCTTTTTGGCA-TTGAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
* **
130296 ATGTTTAT-GGT-AGATTTTTGCAAAATATTT-GCCGAAATCGTGTACGTTAGTCAAAATCACGG
193 ATCTTT-TGGGTCA-ATTTTTGCAAAAT-TTTAGCCGAAATCGTGTAC--TA---ACCATCACGG
* * * * *
130358 TTTTTTTTTTTGCTAAAAAAC-CGTTCCAGGGCCCCGGTTCAGTGTTGCATGATTTTTGGCGCCG
250 -----TTTTTTGCT-AAAAACGCGTTTC-GGGACCCGGCTCAGTTTTGCATGATTTTTGGCGCCA
*
130422 AGACTTCTTGAAATATCTATAT
308 AGACTCCTTGAAATATCTATAT
* * * * *** * * *
130444 TCATCTAACCAAATCTCAGTCACATTGAATTTAAGGTTTTG-TAAAACAAACATCTGAATCATGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * * **
130508 TTCGAATTAATTAGAATTTAATTCGGAAAATAATAGGAAAAACGATATTAGAAGCATGAAAAAAC
66 TTCGATTTAATTAGAAATTAATTCAG-AAA-AATATGAAAAACGATATTA-AAGCGTG-AAAAGT
* ** * * *
130573 CCTTCAATCTTTTTGGTGTTGAATTATATAGT-TTTTATTAGTATTGTGGCCAAAAATTGAGGAA
127 CCTCCAATCTTTTTGGCATTGAATTATATA-TATTTTATGAGTATTTTAGCCAAAAATTGAGGAA
* * * **
130637 ATAA-CTTTCGAGTCAATTTTTGCAAAATTCTAGCCGAAATCGTGTAATAACTAATAATTATCAC
191 A-AATCTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG---T-AC---TAACCATCAC
* * * * * *
130701 GGTTTTTTGGCTAAAAATGCGTTCCGGTG-CCTCGACTAAGTTTTACATGATTTTTGGCGCAAAT
248 GGTTTTTT-GCTAAAAACGCGTTTCGG-GACC-CGGCTCAGTTTTGCATGATTTTTGGCGCCAA-
* * *
130765 G-CTCTTTGAGATATCCATAT
309 GACTCCTTGAAATATCTATAT
* * * * * *
130785 TCATCTAATCAAACCTCAGCTACATTGGATTTAAGAATATGTTTTTACGAGTATTTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
*
130850 TTAC-ATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGGAAAGTCC
66 TT-CGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATT-AAAGCGTGAAAAGTCC
* * * ** *
130914 TCAAATCTTTTTTGGCATTAAATTATATATATTTTATGATTATTTTAGTTAAAAATTAAAGGAAA
129 TCCAATC-TTTTTGGCATTGAATTATATATATTTTATGAGTATTTTAGCCAAAAATT-GAGGAAA
** ** * * * ** *
130979 AAT-TTTTCGACTCAGCTTTTGCAAAATTTCAGTCAAAATCGTGTACTAACCATCATTGTTTTTG
192 AATCTTTT-GGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTT
* ** * * *
131043 GTTAAAAACGCGTTTCGGGGTCCGGAAT-AGTTTTGCATGATTTTTGGTGCCGAGACTCCTTGAA
256 GCTAAAAACGCGTTTCGGGACCCGG-CTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAA
*
131107 ATATCTATAC
320 ATATCTATAT
** * * * * *
131117 TCATCTAATCAAATCAGAGCCACATTGAATTAAAGTATTTGTTTTTACGAGCATTTGAATTTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
*
131182 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAATCCT
66 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATT-AAAGCGTGAAAAGTCCT
** * * * * * *
131247 CCAATCTTTTTGGTGTTGAATTCTATATATTTTTTGAATATTGTAGCTAAAAATTGAGGAGAAAT
130 CCAATCTTTTTGGCATTGAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAAT
* * * *
131312 ATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATGTAC---CAATCACGGTTTTTTGGCT
195 CTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTT-GCT
* * * * * * * *
131374 AAAAACGGGATCCGGGACCC-CCAATCAGTTTTGCATGATTTTTTGTGGCAAAACTCCTTGAAAT
259 AAAAACGCGTTTCGGGACCCGGC--TCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAAT
*
131438 ATCTATTT
322 ATCTATAT
* * * * * * * * *
131446 TCATCTAACCAGATCTTAGCCGCATTGGATCTAAGAATTTGTTTCTACGAGCAT-TCAAATCATG
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT-GAATCTTG
* * * * * * * * * *
131510 TTTCAATTCAGTTAAAAATTGAGTTGAAAAAAATAGGGAAAACGATATTAGAAGCGTGAGAAGTC
65 TTTCGATTTAATTAGAAATT-AATTCAGAAAAATATGAAAAACGATATTA-AAGCGTGAAAAGTC
* * * * * * *
131575 TTACAATCTCTTTGGCATCGAATTATATAT-TTTTAATGAGTATTGTGGCTAAAAATTGA-G-AA
128 CTCCAATCTTTTTGGCATTGAATTATATATATTTT-ATGAGTATTTTAGCCAAAAATTGAGGAAA
* * * * *
131637 AATATTTTGGGTAAATTTGTGCAAAATTTTAGCCGAAATC-T-T-GT-ACCATCATGGTTTTTTT
192 AATCTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGG--TTTTT
* * * * *
131698 TAGCTAAAAATGCG-TTCCGAAGCCTTGTG-TCAGTTTTGTATGATTTTTGGCGCCAAGACTCCT
255 T-GCTAAAAACGCGTTTCGGGA-CC-CG-GCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCT
*
131761 TAAAATATATCTATAT
316 T-GAA-ATATCTATAT
* * * * ** **
131777 TCATCCAACCAAATCTCAGCCACATTGTATTTAAGGATTTGTTTTTACAAGTTTCCAAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * ** * * * * *
131842 TTCAATTTAATCAAAAATTAATTTGGAAATAAAATAGAAAAAACCATTTTAGAAGTGTGAAAAGG
66 TTCGATTTAATTAGAAATTAATTCAGAAA-AATAT-G-AAAAACGATATTA-AAGCGTGAAAAGT
* * * * * * * * * *
131907 CTTTCAA-CTTTTTTGGCGTTGAATTATATAT-TATTTATAATTATTTTCGCTAGAAATCGAGAA
127 CCTCCAATC-TTTTTGGCATTGAATTATATATAT-TTTATGAGTATTTTAGCCAAAAATTGAGGA
** * * * * *
131970 AAAATCTTTTGGGTCCTTTTTTGCAAAATTTTAGCCGAATTTGTATACTAACCATCACGATTTTC
190 AAAATCTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT
* * * * * **
132035 AGCT-AAAACGCGTTCCGCTG-CCCGACTCAGTTTTACATGATTTTTGATGCCAAGACTCCTTGA
255 TGCTAAAAACGCGTTTCG-GGACCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGA
132098 AATATCTATAT
319 AATATCTATAT
* * * * *
132109 TAATCTAACCAAATCTCAGCCACATTAGATTTAA-GAATT-TTTTTACGAGCGTCTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * * *
132172 CTCGATTTAATTAAAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAGGCGTTAAAAGTC
66 TTCGATTTAATTAGAAATTAATTCAG--AAAAATATGAAAAACGATATTA-AAGCGTGAAAAGTC
* * * * * * *
132237 CTTCAAT-TTTTTTG-ATGTCGAATCATATATTTTTTATGAGTATTCTAGCCAAAAATTAAAGAA
128 CTCCAATCTTTTTGGCAT-T-GAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAA
* * * * * *
132300 AATATCTTTCGAGTAAATTTTTGCAAAATTTTAGCCGTAATCGTGTAACAAACCATCACAGTTTT
191 AA-ATCTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT-ACTAACCATCACGGTTTT
* * * * * *
132365 TTGCCTAAAAATGCGTTCCAGGG-CCACGACT-ATGTTTTGCATGATTTCTGGAGCCGAGACTCC
254 TTG-CTAAAAACGCGTTTC-GGGACC-CGGCTCA-GTTTTGCATGATTTTTGGCGCCAAGACTCC
* *
132428 TTGAATTA-CTTTAT
315 TTGAAATATCTATAT
* * *
132442 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTATGTGCATAATGAATCTTG
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAT-CTGAATCTTG
*
132507 TTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCT
65 TTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATT-AAAGCGTGAAAAGTCC
* * * *
132572 TCCAATCTTTTTAGCGTTGAATTATATATATTTTATGAGTATTTTTGCCAAATAA-TGAAGAAAA
129 TCCAATCTTTTTGGCATTGAATTATATATATTTTATGAGTATTTTAGCCAAA-AATTGAGGAAAA
*
132636 ATCTTTCGGGTCA
193 ATCTTTTGGGTCA
132649 TTTATACCAT
Statistics
Matches: 3599, Mismatches: 703, Indels: 387
0.77 0.15 0.08
Matches are distributed among these distances:
294 8 0.00
295 7 0.00
297 65 0.02
298 47 0.01
299 64 0.02
300 3 0.00
301 1 0.00
302 3 0.00
303 1 0.00
304 2 0.00
307 1 0.00
312 21 0.01
313 27 0.01
316 26 0.01
317 21 0.01
322 1 0.00
323 45 0.01
324 73 0.02
325 9 0.00
326 142 0.04
327 25 0.01
328 69 0.02
329 408 0.11
330 351 0.10
331 241 0.07
332 397 0.11
333 413 0.11
334 351 0.10
335 182 0.05
336 50 0.01
337 8 0.00
338 8 0.00
339 19 0.01
340 115 0.03
341 227 0.06
342 67 0.02
343 84 0.02
344 4 0.00
345 8 0.00
346 1 0.00
347 2 0.00
348 2 0.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (329 bp):
TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAGCGTGAAAAGTCCTC
CAATCTTTTTGGCATTGAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAATC
TTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGCTAA
AAACGCGTTTCGGGACCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCT
ATAT
Found at i:129862 original size:332 final size:329
Alignment explanation
Indices: 129245--132641 Score: 2662
Period size: 332 Copynumber: 10.2 Consensus size: 329
129235 GAAAAGCCCT
* * * * * * * *
129245 TTCAATTTTTTTGGCGTTGAGTTATATATTTTTTATGAGTAATGTGGCTAAAAATTGAGAAAAAA
1 TTCAATCTTTTTGGCATTGAATTATATA-TTTTTATGAGTATTTTAGCCAAAAATTGAG-GAAAA
* * * *
129310 AT-ATTTCAGGTCAA-TTTTGCCAAATATTAGCGGAAATCGTG---TAA-CATCACGGTTTTTTG
64 ATCTTTTC-GGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGG-TTTTT-
* * * *
129369 TGGCTAAAAACGC-ATTCCGGAATCCCGGGT-AGTTTTGTATGATTTTTGGCGCCAAGACTCCTT
126 T-GCTAAAAACGCGTTTCCGG--GCCCAGGTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT
* *
129432 AAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGC
188 GAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGC
* * *
129497 ATCTAAATCTTGTTTCGATTTAATTAAAAATTAATTCGGAAAAAGTAGGAAAAACGATATTAGAA
253 ATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAA-TAGGAAAAACGATATTAAAA
* *
129562 GCGTAAAAAACCC
317 GCGTGAAAAATCC
* **
129575 TTCAATATTTTTGGCATTGAATTATATATTTTTCATGAGTATTTTAGCCAAAAATTGAGGAAATT
1 TTCAATCTTTTTGGCATTGAATTATATATTTTT-ATGAGTATTTTAGCCAAAAATTGAGGAAAAA
* * * *
129640 TCTTTTCGGTCATTTTTTGGAAAATTTTAGCCAAAATCGTGTAATAATCATCACGGTTTTTTGCT
65 TCTTTTCGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTTGCT
* * * * *
129705 AAAAACGCGTTTCAGGGCCCTAGGTCAGTTTTGCATTATTTTTGGCACTAAGACTCCTTGAGATA
130 AAAAACGCGTTTCCGGGCCC-AGGTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATA
* * * * * * *
129770 ACCATATTCATATAATCAAATCTCAGACACATTGCATTTAAGGATTTGTTCTTACGAACATCTGA
194 TCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGA
* * *
129835 ATCTTGTTTTGATTTAAATAGAAATTAATTC------ATA-AAAAAACGATA-TAAAAGCGTGAA
259 ATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGATATTAAAAGCGTGAA
*
129892 AAGTCC
324 AAATCC
* * * ***
129898 TCCAATCTTTTTGGCATTAAATTATATATATTTCATGAGTATTTTTTTTCAAAAATTGAGGAAAA
1 TTCAATCTTTTTGGCATTGAATTATATAT-TTTTATGAGTA-TTTTAGCCAAAAATTGAGGAAAA
** * * * * * * * *
129963 AT-AATTCTAGTTATTTTTTCCAAAATTTTAGCCGGAATCGCGTATTAACCATCACAGTTTTTTT
64 ATCTTTTC-GGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCAC-G-GTTTTT
* * * * * * *
130027 TCCTAAAAATGCGTTTCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCGTCGAGACTCCTTGA
126 TGCTAAAAACGCGTTTCCGGGCCCAG-GTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGA
* * * *
130092 AATATCTATATTCATCTAATCAAGTCTCAGTCACATTGCATTTAAGGATTTGTTTTTACGAGGAT
190 AATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAT
* * * * ** *
130157 CTGAATCTTATGTCAATATAATTAGAAATTAATTTAGAAAAATATGAAAAACGATATTAAAAGCG
255 CTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGATATTAAAAGCG
** *
130222 TGCCAAGTCC
320 TGAAAAATCC
** * * * * *
130232 CACAATCTTTTTGG-AGCTGAATTATATATATTTTATGAGTAATTTAGACAGAAATTGAAGAAAA
1 TTCAATCTTTTTGGCA-TTGAATTATATAT-TTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
* *
130296 ATGTTTAT-GGT-AGATTTTTGCAAAATATTT-GCCGAAATCGTGTACGTTAGTCAA-AATCACG
64 ATCTTT-TCGGTCA-ATTTTTGCAAAAT-TTTAGCCGAAATCGTGTA----A-T-AACCATCACG
* *
130357 GTTTTTTTTTTTGCTAAAAAAC-CG-TTCCAGGGCCCCGGTTCAGTGTTGCATGATTTTTGGCGC
120 G-----TTTTTTGCT-AAAAACGCGTTTCC-GGGCCCAGG-TCAGTTTTGCATGATTTTTGGCGC
* * * * * *
130420 CGAGACTTCTTGAAATATCTATATTCATCTAACCAAATCTCAGTCACATTGAATTTAAGGTTTTG
177 CAAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTG
*** * * * * *
130485 -TAAAACAAACATCTGAATCATGTTTCGAATTAATTAGAATTTAATTCGGAAAATAATAGGAAAA
242 TTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-AAA-AATAGGAAAA
* * *
130549 ACGATATTAGAAGCATGAAAAAACCC
305 ACGATATTAAAAGCGTG-AAAAATCC
** * * *
130575 TTCAATCTTTTTGGTGTTGAATTATATAGTTTTTATTAGTATTGTGGCCAAAAATTGAGGAAATA
1 TTCAATCTTTTTGGCATTGAATTATATA-TTTTTATGAGTATTTTAGCCAAAAATTGAGGAAA-A
* *
130640 A-C-TTTCGAGTCAATTTTTGCAAAATTCTAGCCGAAATCGTGTAATAACTAATAATTATCACGG
64 ATCTTTTCG-GTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAAC-------CATCACGG
* * * * *
130703 TTTTTTGGCTAAAAATGCG-TTCCGGTGCCTC-GACTAAGTTTTACATGATTTTTGGCGCAAATG
121 TTTTTT-GCTAAAAACGCGTTTCCGG-GCC-CAG-GTCAGTTTTGCATGATTTTTGGCGCCAA-G
* * * * * * *
130766 -CTCTTTGAGATATCCATATTCATCTAATCAAACCTCAGCTACATTGGATTTAAGAATATGTTTT
181 ACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTT
* * * *
130830 TACGAGTATTTGAATCTTGTTTAC-ATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGAT
246 TACGAGCATCTGAATCTTGTTT-CGATTTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGAT
* *
130894 ATTAAAAGCGTGGAAAGTCC
310 ATTAAAAGCGTGAAAAATCC
* * ** *
130914 -TCAAATCTTTTTTGGCATTAAATTATATATATTTTATGATTATTTTAGTTAAAAATTAAAGGAA
1 TTC-AATC-TTTTTGGCATTGAATTATATAT-TTTTATGAGTATTTTAGCCAAAAATT-GAGGAA
* ** * * * * **
130978 AAAT-TTTTCGACTCAGCTTTTGCAAAATTTCAGTCAAAATCGTGTACTAACCATCATTGTTTTT
62 AAATCTTTTCG-GTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTT
* * * * * *
131042 GGTTAAAAACGCGTTTCGGGGTCC-GGAAT-AGTTTTGCATGATTTTTGGTGCCGAGACTCCTTG
126 TGCTAAAAACGCGTTTCCGGGCCCAGG--TCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTG
* ** * * *
131105 AAATATCTATACTCATCTAATCAAATCAGAGCCACATTGAATTAAAGTATTTGTTTTTACGAGCA
189 AAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
* * * *
131170 TTTGAATTTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGC
254 TCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGATATTAAAAGC
131235 GTGAAAAATCC
319 GTGAAAAATCC
* ** * * * *
131246 TCCAATCTTTTTGGTGTTGAATTCTATATATTTTT-TGAATATTGTAGCTAAAAATTGAGGAGAA
1 TTCAATCTTTTTGGCATTGAA-T-TATATATTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
* *
131310 AT-ATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATG---T-ACCAATCACGGTTTTTT
64 ATCTTTTC-GGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACC-ATCACGGTTTTTT
** * * * * *
131370 GGCTAAAAACG-GGATCCGGGACCCCCA-ATCAGTTTTGCATGATTTTTTGTGGCAAAACTCCTT
127 -GCTAAAAACGCGTTTCCGGG---CCCAGGTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT
* * * * * * * *
131433 GAAATATCTATTTTCATCTAACCAGATCTTAGCCGCATTGGATCTAAGAATTTGTTTCTACGAGC
188 GAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGC
* * * * * * * * * *
131498 AT-TCAAATCATGTTTCAATTCAGTTAAAAATTGAGTT-GAAAAAAATAGGGAAAACGATATTAG
253 ATCT-GAATCTTGTTTCGATTTAATTAGAAATT-AATTCG-GAAAAATAGGAAAAACGATATTAA
* *
131561 AAGCGTGAGAAGT-C
315 AAGCGTGAAAAATCC
* * * * *
131575 TTACAATCTCTTTGGCATCGAATTATATATTTTTAATGAGTATTGTGGCTAAAAATTGA-G-AAA
1 TT-CAATCTTTTTGGCATTGAATTATATATTTTT-ATGAGTATTTTAGCCAAAAATTGAGGAAAA
* * * * * *
131638 ATATTTTGGGTAAATTTGTGCAAAATTTTAGCCGAAATC-T-T-GT-ACCATCATGGTTTTTTTT
64 ATCTTTTCGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGG--TTTTTT
* * ** *
131699 AGCTAAAAATGCG-TTCCGAAGCCTTGTGTCAGTTTTGTATGATTTTTGGCGCCAAGACTCCTTA
127 -GCTAAAAACGCGTTTCCG-GGCCCAG-GTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT-
* * * * *
131763 AAATATATCTATATTCATCCAACCAAATCTCAGCCACATTGTATTTAAGGATTTGTTTTTACAAG
188 GAA-ATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAG
** ** * * * * * * *
131828 TTTCCAAATCTTGTTTCAATTTAATCAAAAATTAATTTGGAAATAAAATAGAAAAAACCATTTTA
252 CATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGG--A-AAAATAGGAAAAACGATATTA
* * ** *
131893 GAAGTGTGAAAAGGCT
314 AAAGCGTGAAAAATCC
* * * * * * * *
131909 TTCAA-CTTTTTTGGCGTTGAATTATATATTATTTATAATTATTTTCGCTAGAAATCGAGAAAAA
1 TTCAATC-TTTTTGGCATTGAATTATATATT-TTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
* ** * * * * * **
131973 ATCTTTTGGGTCCTTTTTTGCAAAATTTTAGCCGAATTTGTATACTAACCATCACGATTTTCAGC
64 ATCTTTTCGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTTGC
* * * **
132038 T-AAAACGCG-TTCCGCTGCCC-GACTCAGTTTTACATGATTTTTGATGCCAAGACTCCTTGAAA
129 TAAAAACGCGTTTCCG-GGCCCAG-GTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAA
* * * * *
132100 TATCTATATTAATCTAACCAAATCTCAGCCACATTAGATTTAA-GAATT-TTTTTACGAGCGTCT
192 TATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT
* * * * * *
132163 GAATCTTGTCTCGATTTAATTAAAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAGGCG
257 GAATCTTGTTTCGATTTAATTAGAAATTAATTC-G-GAAAAATAGGAAAAACGATATTAAAAGCG
* *
132228 TTAAAAGTCC
320 TGAAAAATCC
* * * * *
132238 TTCAAT-TTTTTTG-ATGTCGAATCATATATTTTTTATGAGTATTCTAGCCAAAAATTAAAGAAA
1 TTCAATCTTTTTGGCAT-T-GAATTATATA-TTTTTATGAGTATTTTAGCCAAAAATTGAGGAAA
* * * *
132301 ATATC-TTTCGAGTAAATTTTTGCAAAATTTTAGCCGTAATCGTGTAACAAACCATCACAGTTTT
63 A-ATCTTTTCG-GTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAA-TAACCATCACGGTTTT
* * * * * *
132365 TTGCCTAAAAATGCG-TTCCAGGG-CCACGACTATGTTTTGCATGATTTCTGGAGCCGAGACTCC
125 TTG-CTAAAAACGCGTTTCC-GGGCCCAGGTC-A-GTTTTGCATGATTTTTGGCGCCAAGACTCC
* * * *
132428 TTGAATTA-CTTTATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTATGT
186 TTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGA
* * *
132492 GCATAATGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAA
251 GCAT-CTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGATATTAA
*
132557 AAGCGTGAAAAGT-C
315 AAGCGTGAAAAATCC
* * * *
132571 TTCCAATCTTTTTAGCGTTGAATTATATATATTTTATGAGTATTTTTGCCAAATAA-TGAAGAAA
1 TT-CAATCTTTTTGGCATTGAATTATATAT-TTTTATGAGTATTTTAGCCAAA-AATTGAGGAAA
132635 AATCTTT
63 AATCTTT
132642 CGGGTCATTT
Statistics
Matches: 2448, Mismatches: 473, Indels: 288
0.76 0.15 0.09
Matches are distributed among these distances:
323 50 0.02
324 71 0.03
325 4 0.00
326 146 0.06
327 27 0.01
328 66 0.03
329 245 0.10
330 265 0.11
331 142 0.06
332 336 0.14
333 211 0.09
334 225 0.09
335 70 0.03
336 37 0.02
337 8 0.00
338 10 0.00
339 21 0.01
340 114 0.05
341 234 0.10
342 72 0.03
343 83 0.03
344 4 0.00
345 7 0.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (329 bp):
TTCAATCTTTTTGGCATTGAATTATATATTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAAT
CTTTTCGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTTGCTA
AAAACGCGTTTCCGGGCCCAGGTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATC
TATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAT
CTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGATATTAAAAGCGTGAAAA
ATCC
Found at i:132638 original size:663 final size:663
Alignment explanation
Indices: 127820--132842 Score: 4092
Period size: 663 Copynumber: 7.6 Consensus size: 663
127810 ACACTTTACA
* * * * * * *
127820 TCATCTAACCAAATCTCAGCAACACTAGATTTAAGAATTTTTTTTTACGAGAATCTGAATCTTAT
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * *
127885 TTCGATTTAATTAGAAATTAATTTAGAAAAATAAGAAATACGATATTAAAAGCGTAAAAAGCCCT
66 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCT
* *
127950 CCAATCTTTTTGGCGTTGAATTATAGAT-TTTTATGAGTATTTTAT-CCAAAAATTGAGGAGAAA
131 CCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTATTTT-TGCCAAAAATTGAGGAAAAA
* * * * * *
128013 TCTTTCGGATCAATTTTTGTAAAATTCTAGCCGAAATCGTGAACTAACAAACCATCAC-GTGTTT
195 TCTTTCGGGTCAATTTTTGCAAAATTTTAGCCG-AAT-GTGTA-T-ACTAACCATCACGGTTTTT
* * * * *
128077 TGGCTAAAAACGCGTTTCGGGGACCC-AGCTCAATTTTGCATGATTTTTGGCTCCGAGACTACTT
256 TGGCTAAAAACGCGTTCCGGGGACCCGA-CTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT
* * * *
128141 GAAATATCTATTTTTATCTAATCAAATTTCAGCCACATTGGATTTAATGATTTGTTTTTACGAGC
320 GAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGC
* * * * * *
128206 ATTTGAATCTTGTTTAGAATTAATTAGAAATTAATT-TGGAAAAATAGG-AAAATGATATTAGAA
385 ATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGAA
* * * *
128269 ACGTCAAAAGCCCTTCAATC-TGTTGGCATTGAATTATATATTTTTTATGAGTATTTTAGCCAAA
450 GCGTGAAAAGTCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTTTAGCCAAA
* * * * *
128333 AATTGAGGAAATATCTTTCGGGTCAATTTTTACAAAATTTTAGCCAAAATCGTGTAAGAACCATC
515 AATTAAGAAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATC
* * * * *** * * *
128398 ACAGTTTTTAGCCAAAAAAGCGTTATGGGGCCCCGGCTCAGTTTTGCATGATTTTTGCCGCCAAG
580 ACGGTTTTTTGCTAAAAACGCGTTCCAGGG-CCCGACTCAGTTTTGCATGATTTTTGGCGCCGAG
* *
128463 ACTCCTTGAGATATCCATAT
644 ACTCCTTGAAATATCTATAT
** * ** ** * *
128483 TCATCTAATAAAATCTTAGCCACATTGGATTTAAAAATTTGTTTTTAAAAGCATCTGAAACCTGT
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * * * *
128548 TTTGATTTAATTGGAAATTAATTCAGAAAAATACGAAAAATGATATT-AAGGCATAAAAAGTCCT
66 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCT
* * *
128612 CCAATCTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTAT-CCAAAGATTGAGGAAAAA
131 CCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTATTTT-TGCCAAAAATTGAGG-AAAA
* ** ** * *
128676 AT-TTTTGGGTCTTTTTTTTTTTTGCAAAATTTTAGTCAAAAT-AGTATACTAACCATCACCGTT
194 ATCTTTCGGGTC-----AATTTTTGCAAAATTTTAG-CCGAATGTGTATACTAACCATCACGGTT
* * * * * *
128739 TTTT-GCTCAAAACGCGTTTC-GGGACCCGGCTCAGTTTTGCAT-ATTTTTTGCGCCGACACTCC
253 TTTTGGCTAAAAACGCGTTCCGGGGACCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCC
* * * * * *
128801 TTGAAATGTCTATACTCATCTAATAAAATCAT-AGTCACATTGCATTTAAGGATTTATTTTTACG
318 TTGAAATATCTATATTCATCTAATCAAATC-TCAGCCACATTGGATTTAAGGATTTGTTTTTACG
* * *
128865 AGCATCTGAATCTTGTTTCGATTTAATTAGAAATTGATTCAGAAAAAATATGAAAAACAATATTA
382 AGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTA
* * * * * * *
128930 AAAGTGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATAATTTTTATGAGTATTATGGCT
447 GAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTTTAGCC
* * * ** * *
128995 AAAAATTGAGGAAATTATCTTTTGGGTCAATTTTTGTGAAATTTTAGCCGAAATCGCGTAATAAT
512 AAAAATT-AAGAAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAAC
** * * ** * *
129060 CATCACGGTTTTGGGCTAAAAACGTGTTCC-GAAGCCCGGTTCAATTTTGAATGATTTTTGGCGC
576 CATCACGGTTTTTTGCTAAAAACGCGTTCCAG-GGCCCGACTCAGTTTTGCATGATTTTTGGCGC
129124 CGAGACTCCTTGAAATATCTATAT
640 CGAGACTCCTTGAAATATCTATAT
** ** * *
129148 TCATCTAACCAAA--T---CC-C---------AACCA-TTGTTTTTAAAAGCATCTTAATCATGT
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
** *
129197 TTCTTTTTTAATTAGAAATTAATTC-G--------G----A--A-A--AAAAG-GATGAAAAGCC
66 TTC-GATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCG-TGAAAAGTC
* * * * * * * * *
129243 CTTTCAATTTTTTTGGCGTTGAGTTATATATTTTTTATGAGTAATGTGGCTAAAAATTGAGAAAA
129 C-TCCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTATTTTTGCCAAAAATTGAG-GAA
* * * * *
129308 AAATATTTCAGGTCAA-TTTTGCCAAATATTAGCGGAAATCGTG-----TAA-CATCACGGTTTT
192 AAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCG-AAT-GTGTATACTAACCATCACGG-TTT
* * ** *
129366 TTGTGGCTAAAAACGCATTCC-GGAATCCCGGGT-AGTTTTGTATGATTTTTGGCGCCAAGACTC
254 TT-TGGCTAAAAACGCGTTCCGGGGA-CCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTC
* *
129429 CTTAAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTACG
317 CTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACG
* * * *
129494 AGCATCTAAATCTTGTTTCGATTTAATTAAAAATTAATTCGGAAAAAGTAGGAAAAACGATATTA
382 AGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTA
* ** * *
129559 GAAGCGTAAAAAACCCTTCAATATTTTTGGCATTGAATTATATATTTTTCATGAGTATTTTAGCC
447 GAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTTTAGCC
* * * * * * *
129624 AAAAATTGAGGAAATTTCTTTTC-GGTCATTTTTTGGAAAATTTTAGCCAAAATCGTGTAATAAT
512 AAAAATTAAGAAAATATC-TTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAAC
* * * * *
129688 CATCACGGTTTTTTGCTAAAAACGCGTTTCAGGGCCCTAGGTCAGTTTTGCATTATTTTTGGCAC
576 CATCACGGTTTTTTGCTAAAAACGCGTTCCAGGGCCCGA-CTCAGTTTTGCATGATTTTTGGCGC
** * * *
129753 TAAGACTCCTTGAGATAACCATAT
640 CGAGACTCCTTGAAATATCTATAT
* * * * * *
129777 TCATATAATCAAATCTCAGACACATTGCATTTAAGGATTTGTTCTTACGAACATCTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * *
129842 TTTGATTTAAATAGAAATTAATTC------ATA-AAAAAACGATA-TAAAAGCGTGAAAAGTCCT
66 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCT
* * * **
129899 CCAATCTTTTTGGCATTAAATTATATATATTTCATGAGTATTTTTTTTCAAAAATTGAGGAAAAA
131 CCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTA-TTTTTGCCAAAAATTGAGGAAAAA
** ** * * * * *
129964 TAATTCTAGTTATTTTTTCCAAAATTTTAGCCGGAATCGCGTAT--TAACCATCACAGTTTTTTT
195 TCTTTCGGGTCAATTTTTGCAAAATTTTAGCC-GAAT-GTGTATACTAACCATCAC-GGTTTTTT
** * * * * *
130027 TCCTAAAAATGCGTTTCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCGTCGAGACTCCTTGA
257 GGCTAAAAACGCGTTCCGGGGACCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGA
* * * *
130092 AATATCTATATTCATCTAATCAAGTCTCAGTCACATTGCATTTAAGGATTTGTTTTTACGAGGAT
322 AATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAT
* * * * * * *
130157 CTGAATCTTATGTCAATATAATTAGAAATTAATTTAG-AAAAATATGAAAAACGATATTAAAAGC
387 CTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGAAGC
** ** * * * * *
130221 GTGCCAAGTCCCACAATCTTTTTGG-AGCTGAATTATATATATTTTATGAGTAATTTAGACAGAA
452 GTGAAAAGTCCTTCAATCTTTTTGGCA-TTGAATTATATATTTTTTATGAGTATTTTAGCCAAAA
* **
130285 ATTGAAGAAAA-ATGTTTATGGT-AGATTTTTGCAAAATATTT-GCCGAAATCGTGTACGTTAGT
516 ATT-AAGAAAATATCTTTCGGGTCA-ATTTTTGCAAAAT-TTTAGCCGAAATCGTGTA----A-T
* ** *
130347 CAA-AATCACGGTTTTTTTTTTTGCTAAAAAAC-CGTTCCAGGGCCCCGGTTCAGTGTTGCATGA
573 -AACCATCACGG-----TTTTTTGCT-AAAAACGCGTTCCAGGG-CCCGACTCAGTTTTGCATGA
*
130410 TTTTTGGCGCCGAGACTTCTTGAAATATCTATAT
630 TTTTTGGCGCCGAGACTCCTTGAAATATCTATAT
* * * *** * * *
130444 TCATCTAACCAAATCTCAGTCACATTGAATTTAAGGTTTTG-TAAAACAAACATCTGAATCATGT
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * * * **
130508 TTCGAATTAATTAGAATTTAATTCGGAAAATAATAGGAAAAACGATATTAGAAGCATGAAAAAAC
66 TTCGATTTAATTAGAAATTAATTCAG-AAA-AATATGAAAAACGATATTAAAAGCGTG-AAAAGT
* * * * *
130573 CCTTCAATCTTTTTGGTGTTGAATTATATAGT-TTTTATTAGTATTGTGGCCAAAAATTGAGGAA
128 CCTCCAATCTTTTTGGCGTTGAATTATATA-TATTTTATGAGTATTTTTGCCAAAAATTGAGGAA
* * **
130637 ATAA-CTTTCGAGTCAATTTTTGCAAAATTCTAGCCGAAATCGTGTAATAACTAATAATTATCAC
192 A-AATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCG-AAT-GTGT-AT-AC---TAACCATCAC
* * * * *
130701 GGTTTTTTGGCTAAAAATGCGTTCCGGTG-CCTCGACTAAGTTTTACATGATTTTTGGCGCAAAT
249 GGTTTTTTGGCTAAAAACGCGTTCCGGGGACC-CGACTCAGTTTTGCATGATTTTTGGCGCCAA-
* * * * * * *
130765 G-CTCTTTGAGATATCCATATTCATCTAATCAAACCTCAGCTACATTGGATTTAAGAATATGTTT
312 GACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTT
* * *
130829 TTACGAGTATTTGAATCTTGTTTAC-ATTTAATTAGAAATTAATTCAG-AAAAATATGAAAAACG
377 TTACGAGCATCTGAATCTTGTTT-CGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACG
* * * * *
130892 ATATTAAAAGCGTGGAAAGTCC-TCAAATCTTTTTTGGCATTAAATTATATATATTTTATGATTA
441 ATATTAGAAGCGTGAAAAGTCCTTC-AATC-TTTTTGGCATTGAATTATATATTTTTTATGAGTA
** * ** ** * * *
130956 TTTTAGTTAAAAATTAAAGGAAAA-ATTTTTCGACTCAGCTTTTGCAAAATTTCAGTCAAAATCG
504 TTTTAGCCAAAAATT-AA-GAAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCG
* ** * * * * * *
131020 TGTACTAACCATCATTGTTTTTGGTTAAAAACGCGTTTCGGGGTCCGGAAT-AGTTTTGCATGAT
567 TGTAATAACCATCACGGTTTTTTGCTAAAAACGCGTTCCAGGG-CCCGACTCAGTTTTGCATGAT
* *
131084 TTTTGGTGCCGAGACTCCTTGAAATATCTATAC
631 TTTTGGCGCCGAGACTCCTTGAAATATCTATAT
* ** * * * * *
131117 TCATCTAATCAAATCAGAGCCACATTGAATTAAAGTATTTGTTTTTACGAGCATTTGAATTTTGT
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
*
131182 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAATCCT
66 TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCT
* * * * * * * *
131247 CCAATCTTTTTGGTGTTGAATTCTATATATTTTTTGAATATTGTAGCTAAAAATTGAGGAGAAAT
131 CCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTATTTTTGCCAAAAATTGAGGAAAAAT
* * * *
131312 ATTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA-AT-CAT-GT-ACCAATCACGGTTTTTTGGC
196 CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAATGTGTATACTAACC-ATCACGGTTTTTTGGC
* * * * * * * *
131373 TAAAAACGGGATCC-GGGACCCCCAATCAGTTTTGCATGATTTTTTGTGGCAAAACTCCTTGAAA
260 TAAAAACGCGTTCCGGGGA-CCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAA
* * * * * * * *
131437 TATCTATTTTCATCTAACCAGATCTTAGCCGCATTGGATCTAAGAATTTGTTTCTACGAGCAT-T
324 TATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT
* * * * * * * * *
131501 CAAATCATGTTTCAATTCAGTTAAAAATTGAGTTGA-AAAAAATAGGGAAAACGATATTAGAAGC
389 -GAATCTTGTTTCGATTTAATTAGAAATT-AATTCAGAAAAAATAGGAAAAACGATATTAGAAGC
* * * * * * *
131565 GTGAGAAGT-CTTACAATCTCTTTGGCATCGAATTATATATTTTTAATGAGTATTGTGGCTAAAA
452 GTGAAAAGTCCTT-CAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTTTAGCCAAAA
* * * *
131629 ATTGAGAAAATAT-TTT-GGGTAAATTTGTGCAAAATTTTAGCCGAAATC-T-T-GT-ACCATCA
516 ATTAAGAAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCA
* * * * ** *
131688 TGGTTTTTTTTAGCTAAAAATGCGTTCC-GAAGCCTTGTGTCAGTTTTGTATGATTTTTGGCGCC
581 CGG--TTTTTT-GCTAAAAACGCGTTCCAG-GGCC-CGACTCAGTTTTGCATGATTTTTGGCGCC
* *
131752 AAGACTCCTTAAAATATATCTATAT
641 GAGACTCCTT-GAA-ATATCTATAT
* * * ** **
131777 TCATCCAACCAAATCTCAGCCACATTGTATTTAAGGATTTGTTTTTACAAGTTTCCAAATCTTGT
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * ** * * * * * *
131842 TTCAATTTAATCAAAAATTAATTTGGAAATAAAATAGAAAAAACCATTTTAGAAGTGTGAAAAGG
66 TTCGATTTAATTAGAAATTAATTCAGAAA-AATAT-G-AAAAACGATATTAAAAGCGTGAAAAGT
* * * * * * * * *
131907 CTTTCAA-CTTTTTTGGCGTTGAATTATATAT-TATTTATAATTATTTTCGCTAGAAATCGAGAA
128 CCTCCAATC-TTTTTGGCGTTGAATTATATATAT-TTTATGAGTATTTTTGCCAAAAATTGAGGA
* ** * *
131970 AAAATCTTTTGGGTCCTTTTTTGCAAAATTTTAGCCGAATTTGTATACTAACCATCAC-GATTTT
191 AAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAATGTGTATACTAACCATCACGGTTTTT
** ** * **
132034 CAGCT-AAAACGCGTTCCGCTG-CCCGACTCAGTTTTACATGATTTTTGATGCCAAGACTCCTTG
256 TGGCTAAAAACGCGTTCCGGGGACCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTG
* * * * *
132097 AAATATCTATATTAATCTAACCAAATCTCAGCCACATTAGATTTAA-GAATT-TTTTTACGAGCG
321 AAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
* * * *
132160 TCTGAATCTTGTCTCGATTTAATTAAAAATTAATTCAGAAAAAAATAGGAAAAACAATATTAGAG
386 TCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAG-AAAAAATAGGAAAAACGATATTAGAA
* * * *
132225 GCGTTAAAAGTCCTTCAAT-TTTTTTG-ATGTCGAATCATATATTTTTTATGAGTATTCTAGCCA
450 GCGTGAAAAGTCCTTCAATCTTTTTGGCAT-T-GAATTATATATTTTTTATGAGTATTTTAGCCA
* * * *
132288 AAAATTAAAGAAAATATCTTTCGAGTAAATTTTTGCAAAATTTTAGCCGTAATCGTGTAACAAAC
513 AAAATT-AAGAAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAA-TAAC
* * * *
132353 CATCACAGTTTTTTGCCTAAAAATGCGTTCCAGGGCCACGACT-ATGTTTTGCATGATTTCTGGA
576 CATCACGGTTTTTTG-CTAAAAACGCGTTCCAGGGCC-CGACTCA-GTTTTGCATGATTTTTGGC
* *
132417 GCCGAGACTCCTTGAATTA-CTTTAT
638 GCCGAGACTCCTTGAAATATCTATAT
* * * *
132442 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTATGTGCATAATGAATCTTG
1 TCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAT-CTGAATCTTG
*
132507 TTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCT
65 TTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCC
* *
132572 TCCAATCTTTTTAGCGTTGAATTATATATATTTTATGAGTATTTTTGCCAAATAA-TGAAGAAAA
130 TCCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTATTTTTGCCAAA-AATTGAGGAAAA
*
132636 ATCTTTCGGGTC-A--TTT-----A---TA-CC----------A-T---CAT---GGGTTTTTGG
194 ATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAATGTGTATACTAACCATCACGGTTTTTTGG
* ** * * *
132672 CTAAAAACGCGTTCCGAGTCCCCGGCTCAGTTTTGCGTGATTTTTTGGCGCCGAGACTCCTT-AA
259 CTAAAAACGCGTTCCGGGGACCCGACTCAGTTTTGCATGA-TTTTTGGCGCCAAGACTCCTTGAA
* * * ** * *
132736 ATATCTATATT-ATCCAATCAAATCTCAGACATATTCTATTTAAAGATTTGTTTTTACGAGCATT
323 ATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATC
*
132800 TGAATCTTGTTTCGATTTAATTAGAAATTAATTCAAAAAAAAT
388 TGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAT
132843 GAAACAAAAA
Statistics
Matches: 3486, Mismatches: 692, Indels: 390
0.76 0.15 0.09
Matches are distributed among these distances:
625 7 0.00
626 8 0.00
627 1 0.00
628 99 0.03
629 268 0.08
631 2 0.00
633 11 0.00
634 55 0.02
635 17 0.00
636 39 0.01
637 45 0.01
638 63 0.02
640 1 0.00
641 2 0.00
644 21 0.01
645 23 0.01
649 27 0.01
650 22 0.01
651 2 0.00
652 3 0.00
653 48 0.01
654 55 0.02
655 4 0.00
656 14 0.00
657 141 0.04
658 194 0.06
659 12 0.00
660 103 0.03
661 215 0.06
662 268 0.08
663 431 0.12
664 79 0.02
665 204 0.06
666 151 0.04
667 101 0.03
668 82 0.02
669 2 0.00
670 13 0.00
671 89 0.03
672 24 0.01
673 85 0.02
674 60 0.02
675 11 0.00
676 57 0.02
677 43 0.01
678 3 0.00
679 6 0.00
681 3 0.00
682 182 0.05
683 54 0.02
684 35 0.01
685 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (663 bp):
TCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
TTCGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCT
CCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTATTTTTGCCAAAAATTGAGGAAAAAT
CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAATGTGTATACTAACCATCACGGTTTTTTGGCT
AAAAACGCGTTCCGGGGACCCGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATA
TCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGA
ATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGAAGCGTGA
AAAGTCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTAA
GAAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTT
TTTTGCTAAAAACGCGTTCCAGGGCCCGACTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTT
GAAATATCTATAT
Found at i:135232 original size:321 final size:316
Alignment explanation
Indices: 134452--135234 Score: 835
Period size: 311 Copynumber: 2.5 Consensus size: 316
134442 TTTTTTATGT
* * * *
134452 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAA-CAAA-A-TCC-C
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATAGTCCTC
* * * ** * * *
134513 AGCCACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAACCTTGTTGCAATTTAATTAAAAA
66 AGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAA
*
134578 TTAATTC-GGAAAAA-AAATGGACAAGCGTGAAAAGCTCATCAATCTTTTTGGAGTTGAATTATA
131 TTAATTCGGGAAAAATAAATGGAAAAGCGTGAAAAGCTCATCAATCTTTTTGGAGTTGAATTATA
* ** * *
134641 TATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAACCGAAA
196 TATTTTTTCGGAGTATTGTGGCAAAAAATTGAGAAAAAAC-AATCAGATCAATTTTTAACCGAAA
** *
134706 TCGTATACTAACAATCACGATTTTCGGCTAAAAATGCGTTCCCGAGTCCCGACTCAA
260 TCGTATACTAACAATCACGATTTTCGGCTAAAAACCCGTTCCCGAGCCCCGACTCAA
* *
134763 TTTTGCATGACTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACTAAAT-G---TC
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATAGTCCTC
* * *
134824 AGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTAAATCA-TGTTTCGATTTAATTAGAA
66 AGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGAAT-ATTGTTTCGATTTAATTAGAA
* *
134888 ATTAATTC-GGAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGAC-CATCAATCTTTTTGGT
130 ATTAATTCGGGAAAAA-T----AAATG----GAAAAGCGTGAAAAG-CTCATCAATCTTTTTGGA
* * *
134951 GTTGAATTATATATTTTTT-GGAGTATTGTGGGAAAAAATTCGGGAAAAAA-AATCAGGTCAATT
185 GTTGAATTATATATTTTTTCGGAGTATTGTGGCAAAAAATT-GAGAAAAAACAATCAGATCAATT
** * * * * * * * * *
135014 TTTAGTCGAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACCCGTTTCGGGGACCCCT
249 TTTAACCG-AAATCGTATACTAACAATCA-CGATTTTCGGCTAAAAACCCGTTCCCGAG-CCCCG
135079 ACTCAA
311 ACTCAA
* *
135085 TTTTGCATGATTTTTGGCAG-AAAGACTCCTTGAAATATCTAAATTCATCTAACCAATATCAGTC
1 TTTTGCATGATTTTTGGC-GCAAAGACTCCTTGAAATATCTATATTCATCAAACCAA-AT-AGTC
* * *
135149 TCTCAGCCACATTAGATTTAAGGATTTGTTTTTAAGTGTATCTGAATATTGTTTCGATTTAATTA
63 -CTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTA
135214 GAAA-TAGATTCGGGAAAAATA
127 GAAATTA-ATTCGGGAAAAATA
135235 GAAAAATGAT
Statistics
Matches: 390, Mismatches: 51, Indels: 48
0.80 0.10 0.10
Matches are distributed among these distances:
311 116 0.30
312 3 0.01
317 5 0.01
319 14 0.04
320 37 0.09
321 76 0.19
322 60 0.15
323 3 0.01
325 2 0.01
328 3 0.01
329 64 0.16
330 7 0.02
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (316 bp):
TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATAGTCCTC
AGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAA
TTAATTCGGGAAAAATAAATGGAAAAGCGTGAAAAGCTCATCAATCTTTTTGGAGTTGAATTATA
TATTTTTTCGGAGTATTGTGGCAAAAAATTGAGAAAAAACAATCAGATCAATTTTTAACCGAAAT
CGTATACTAACAATCACGATTTTCGGCTAAAAACCCGTTCCCGAGCCCCGACTCAA
Found at i:135923 original size:325 final size:325
Alignment explanation
Indices: 135332--136161 Score: 1035
Period size: 325 Copynumber: 2.5 Consensus size: 325
135322 TATTTTGTGT
* * * * *
135332 TTTTGCATGATTTTTGAC-CTAAATACTCCTTGAAATATCTATAATT-ATCGAACAAAATCCCAG
1 TTTTGCATGATTTTTGGCGC-AAAGACTCCTTGAAATATCTAT-ATTCATCAAACCAAATCTCAG
** * *
135395 CCATGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATT
64 CCACATTAGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATT
* * * *
135460 AATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGCGTGAAAAGCCGGTCAATATTTTTGGCGT
129 GATTCGGAAAAAAATGGAAAAATGATATTA-AA-AGCGTGAAAAGCCGATCAATATTTTTGGCGT
* * *** *
135525 TGAATTATATATTTTTTCTGAGTATTGTGGCCAAAAATTGAGAAAAAAACTTTTCCGATCAGTTT
192 TGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAGATTCCGATCAGCTT
* * *
135590 TTAGCCG-AAATCGTATACTAACCATCACGGTTTTT-TGCTAAAAACGCGTTCCCGA-GCCCCGA
257 TAAGCCGAAAATCGTATACTAACCATCACGGTTTTTGGGATAAAAACGCGTT-CCGAGGCCCCGA
135652 CTCAA
321 CTCAA
*
135657 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCC
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCC
* * * * * *
135722 ACATTGGATATAAGGATTTGGTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATTGA
66 ACATTAGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTGA
* * *
135787 TTCGGAAAAAAATTGGAAAAATGATATTAAAAGCGTGAAATGACC-ATCAATCTTTTTGGTGTTG
131 TTCGGAAAAAAA-TGGAAAAATGATATTAAAAGCGTGAAAAG-CCGATCAATATTTTTGGCGTTG
* *
135851 AATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAAGATTCGGGTCAGCTTT
194 AATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAG-AAAAAAAAGATTCCGATCAGCTTT
* * * *
135916 AAGCCGAAAATCGTGTACTAACCATCATGGTTTTTGGGATAAAAACGCGTTTCGAGGGCCCCGGC
258 AAGCCGAAAATCGTATACTAACCATCACGGTTTTTGGGATAAAAACGCGTTCCGA-GGCCCCGAC
*
135981 TCAG
322 TCAA
* *
135985 TTTTGCTTGATTTTTGGCAG-AAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTCAGGC
1 TTTTGCATGATTTTTGGC-GCAAAGACTCCTTGAAATATCTATATTCATCAAACCAA----A---
*
136049 TCTCAGCCACATTAGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTATTTA
58 TCTCAGCCACATTAGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTA
* * * * *
136114 GAAATAGATTTGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAA
123 GAAATTGATTCGGAAAAAAATGGAAAAATGATATTAAAAGCGTGAAAA
136162 ATTTTTCAAT
Statistics
Matches: 434, Mismatches: 54, Indels: 25
0.85 0.11 0.05
Matches are distributed among these distances:
324 66 0.15
325 147 0.34
326 45 0.10
327 13 0.03
328 62 0.14
329 1 0.00
332 1 0.00
334 24 0.06
335 75 0.17
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (325 bp):
TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCC
ACATTAGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTGA
TTCGGAAAAAAATGGAAAAATGATATTAAAAGCGTGAAAAGCCGATCAATATTTTTGGCGTTGAA
TTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAGATTCCGATCAGCTTTAAG
CCGAAAATCGTATACTAACCATCACGGTTTTTGGGATAAAAACGCGTTCCGAGGCCCCGACTCAA
Found at i:136538 original size:906 final size:894
Alignment explanation
Indices: 133571--137111 Score: 5302
Period size: 906 Copynumber: 4.0 Consensus size: 894
133561 GGCTCAATTC
* ** * *
133571 TGCATGTTTTTTGACGAAAATACTCCTTGAAATATCTAAATTCATTGAACAAAATCCCAGCCACG
1 TGCATGATTTTTGACCTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCCACG
133636 TTCGATTTAAGTATTTGTTTTTACGAGGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAATT
66 TTCGATTTAAGTATTTGTTTTTACGA-GCATCTGAATCTTGTTTCAATTTAATTAAAAATTAA-T
* * * *
133701 TGGGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCCATCAATCTTTTTAGCGTTGAAT
129 TCGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCGATCAATCTTTTTGGCGTTGAAT
* * *
133766 TATATATTTTTTCTGAGTATTGTGACAAAAAATTGAGAACAAACGTTTCCGATCAGTTTTTAGCC
194 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAGCC
* * * * * *
133831 GAAATCGTGTACCGTTA-CAT-ACAGCTTTTGGCTAAAAATGCGTTCCCGAGCCCTGACTCAATT
259 GAAATCGTATA-C-TAACCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATT
* *
133894 TTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAAACAAATATCAGCCAC
322 TTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCAC
** * *
133959 ATTGGATATAAGGATTTCTTTTTACAAGCATCTGAATGTTGTTTCGATTTAATTAGAAATTAATT
387 ATTGGATATAAGGATTTGGTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
*
134024 CGGAATAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATT
452 CGGAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATT
*
134089 ATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAG--AAAAAAAATT-GGGTCAGTTTTTAGCC
517 ATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAAATTCGGGTCAATTTTTAGCC
* * *
134151 GAAAATCGTGTACTAACCATCATGGTTTTTGGGTTAAAAACGAGTTTCGGCGGCCCCGACTCATT
582 GAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGCGGCCCCGACTCAGT
* *
134216 TTTGCATGATTTTTGGCAGAAAGACTCCTTAAAATATTTATATTCATCTAACCAATCTCAGGCTC
647 TTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTCAGGCTC
* * *
134281 TGAGTCACATTAGATTTAAGGATATT-TTTTTACGAGTATCTGAATATTGTTTCGAA-TTAAATA
712 TCAGCCACATTAGATTTAAGGAT-TTGTTTTTACGAGTATCTGAATATTGTTTC-AATTTAATTA
* * * **
134344 GAAATAGATTCAGAAAAAATAGAAAATTGATATTTAAAGCCAGAAAAATATTTCAAAATTTTTTT
775 GAAATAGATTCGGAAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTTTTTTT
*
134409 TGCATTGAATTGTGTATTTTTTGTCG-AAA-ATA---TT-TTTTTA----TGTTTT
840 TGCGTTGAATTGTGTATTTTTTG-CGAAAATATATTTTTGTTTTTATTTTTGTTTT
*
134455 TGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCCACG
1 TGCATGATTTTTGACCTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCCACG
* *
134520 TTCGATTTAAGTATTTGTTTTTACGAGCATCTGAACCTTGTTGCAATTTAATTAAAAATTAATTC
66 TTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAATTC
*
134585 GGAAAAAAAATGG----AC--------AAGCGTGAAAAGCTC-ATCAATCTTTTTGGAGTTGAAT
131 GG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC-CGATCAATCTTTTTGGCGTTGAAT
*
134637 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAACC
194 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAGCC
* * * * *
134702 GAAATCGTATACTAACAATCACGATTTTCGGCTAAAAATGCGTTCCCGAGTCCCGACTCAATTTT
259 GAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATTTT
* *
134767 GCATGACTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACTAAATGTCAGCCACAT
324 GCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCACAT
* * *
134832 TGGATATAAGGATTTGTTTTTACGAGCATCTAAATCATGTTTCGATTTAATTAGAAATTAATTCG
389 TGGATATAAGGATTTGGTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCG
134897 G-AAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTAT
454 GAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTAT
* * ** * *
134961 ATATTTTTT-GGAGTATTGTGGGAAAAAATTC-GGGAAAAAAAA-TCAGGTCAATTTTTAGTCGA
519 ATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAAATTCGGGTCAATTTTTAGCCGA
* * *
135023 AAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACCCGTTTCGG-GGACCCCTACTCAATT
584 AAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGCGG-CCCCGACTCAGTT
* * *
135087 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTAAATTCATCTAACCAATATCAGTCTCT
648 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTCAGGCTCT
* * *
135152 CAGCCACATTAGATTTAAGGATTTGTTTTTAAGTGTATCTGAATATTGTTTCGATTTAATTAGAA
713 CAGCCACATTAGATTTAAGGATTTGTTTTTACGAGTATCTGAATATTGTTTCAATTTAATTAGAA
*
135217 ATAGATTCGGGAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTTTTTTTTGC
778 ATAGATTCGGAAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTTTTTTTTGC
* * *
135282 GTAGAATTGTATATTTTTGGCCGAAAATATATTTTTG-TTTTATTTTGTGTTTT
843 GTTGAATTGTGTATTTTTTG-CGAAAATATATTTTTGTTTTTATTTT-TGTTTT
*
135335 TGCATGATTTTTGACCTAAATACTCCTTGAAATATCTATAATT-ATCGAACAAAATCCCAGCCAT
1 TGCATGATTTTTGACCTAAATACTCCTTGAAATATCTAT-ATTCATCGAACAAAATCCCAGCCAC
135399 GTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAATT
65 GTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAATT
* *
135464 CGGAAAAAAATGGAAAAACGATATTAGAAGCGCGTGAAAAGCCGGTCAATATTTTTGGCGTTGAA
130 CGGAAAAAAATGGAAAAACGATATTAGAA--GCGTGAAAAGCCGATCAATCTTTTTGGCGTTGAA
*
135529 TTATATATTTTTTCTGAGTATTGTGGCCAAAAATTGAGAAAAAAACTTTTCCGATCAGTTTTTAG
193 TTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG-AAAAAACTTTTCCGATCAGTTTTTAG
*
135594 CCGAAATCGTATACTAACCATCACGGTTTTTTGCTAAAAACGCGTTCCCGAGCCCCGACTCAATT
257 CCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATT
135659 TTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCAC
322 TTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCAC
* *
135724 ATTGGATATAAGGATTTGGTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATTGATT
387 ATTGGATATAAGGATTTGGTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
*
135789 CGGAAAAAAATTGGAAAAATGATATTAAAAGCGTGAAATGACCATCAATCTTTTTGGTGTTGAAT
452 CGG-AAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAAT
** *
135854 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAAGATTCGGGTCAGCTTTAAG
516 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAA-ATTCGGGTCAATTTTTAG
* *
135919 CCGAAAATCGTGTACTAACCATCATGGTTTTTGGGATAAAAACGCGTTTCGAG-GGCCCCGGCTC
580 CCGAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCG-GCGGCCCCGACTC
*
135983 AGTTTTGCTTGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTCAGG
644 AGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTCAGG
* * * *
136048 CTCTCAGCCACATTAGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTATTT
709 CTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGTATCTGAATATTGTTTCAATTTAATT
* *
136113 AGAAATAGATTTGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATTTTTCAATTTTTTT
774 AGAAATAGATTCGG-AAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATATTTCAA--TTTTT
136178 TTTTTGCGTTGAATTGTGTATTTTTTGCAGAAAATATTTATTTTTGTTTTTATTTTCTGTTTT
836 TTTTTGCGTTGAATTGTGTATTTTTTGC-GAAAATA--TATTTTTGTTTTTATTTT-TGTTTT
* * *
136241 TGCATGATTTTTGACCTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCTCAGGCATG
1 TGCATGATTTTTGACCTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCCACG
136306 TTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAATTC
66 TTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAATTC
* *
136371 GG-AAAAAATGGAAAAACGATATTAGAAGCGCGTGAAAAGCCGGTCAATTTTTTTGGCGTTGAAT
131 GGAAAAAAATGGAAAAACGATATTAGAA--GCGTGAAAAGCCGATCAATCTTTTTGGCGTTGAAT
136435 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAACTTTTCCGATCAGTTTTTAGC
194 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG-AAAAAACTTTTCCGATCAGTTTTTAGC
*
136500 CGAAATCGTGTACTAACTCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATT
258 CGAAATCGTATACTAAC-CATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATT
136565 TTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCAC
322 TTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCAC
* *
136630 ATTGGATATAAGGATTTAGTTTTACGAGAATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
387 ATTGGATATAAGGATTTGGTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
* *
136695 CGGAAAAAGATTCGAAAAATGATATCAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAAT
452 CGGAAAAA-ATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAAT
* *
136760 TATATAATTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAATAAAAAAAAATAACGGGTCAA
516 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAG------A-AAAAAAAAAT-TCGGGTCAA
* *
136825 TTTTTAGCCGAAAATCGTGTACGTTA--ATCATGG-TTTTGGTGCTAAAAACGCATTTCGGCGGC
573 TTTTTAGCCGAAAATCGTGTAC-TAACCATCATGGTTTTTGG-GCTAAAAACGCGTTTCGGCGGC
* *
136887 CCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCTTTGAAATATCTATATTCATCTAACCA
636 CCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCA
* * * * *
136952 ATCTCAGGCTTTCAACCACATTAGATTTAAAGATTTGTTTTTACGAGTATCTGAAAATTGTTTCG
701 ATCTCAGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGTATCTGAATATTGTTTCA
* * *
137017 ATTTAATTAGAAATATATTCGGGATAAAATTTA-AAAAATGATATTTCAAGCGAG-AAAATATTT
766 ATTTAATTAGAAATAGATTC-GGA-AAAA-ATAGAAAAATGATATTTAAAGCGAGAAAAATATTT
137080 CAA--TTTTTTTTGCGTTGAATTGTGTATTTTTT
828 CAATTTTTTTTTTGCGTTGAATTGTGTATTTTTT
137112 CTGACTATTG
Statistics
Matches: 2430, Mismatches: 158, Indels: 114
0.90 0.06 0.04
Matches are distributed among these distances:
868 1 0.00
869 28 0.01
870 344 0.14
871 267 0.11
872 4 0.00
875 7 0.00
879 12 0.00
880 130 0.05
881 3 0.00
882 4 0.00
883 46 0.02
884 87 0.04
891 2 0.00
892 1 0.00
893 66 0.03
894 210 0.09
896 71 0.03
897 20 0.01
898 8 0.00
899 1 0.00
900 198 0.08
901 44 0.02
902 1 0.00
903 36 0.01
905 157 0.06
906 406 0.17
908 29 0.01
911 7 0.00
912 175 0.07
913 61 0.03
914 4 0.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (894 bp):
TGCATGATTTTTGACCTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCCACG
TTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAATTC
GGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCGATCAATCTTTTTGGCGTTGAATTA
TATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCCGATCAGTTTTTAGCCGA
AATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATTTTGC
ATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCACATTG
GATATAAGGATTTGGTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGA
AAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTATAT
ATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAAATTCGGGTCAATTTTTAGCCGAAA
ATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGCGGCCCCGACTCAGTTTTG
CATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTCAGGCTCTCAG
CCACATTAGATTTAAGGATTTGTTTTTACGAGTATCTGAATATTGTTTCAATTTAATTAGAAATA
GATTCGGAAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTTTTTTTTGCGTT
GAATTGTGTATTTTTTGCGAAAATATATTTTTGTTTTTATTTTTGTTTT
Found at i:137134 original size:341 final size:331
Alignment explanation
Indices: 136238--137476 Score: 839
Period size: 325 Copynumber: 3.7 Consensus size: 331
136228 TATTTTCTGT
* * * * * **
136238 TTTTGCATGATTTTTGAC-CTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCTCAGG
1 TTTTGCATGATTTTTGGCGC-AAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAAC
** * * * ** * *
136302 CATGTTCGAT-TTAAGTATTT-GTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAAT
65 CACATTAGATATAAAG-ATTTAG-TTTTACGAGAATCTGAAAATTGTTTCGATTTAATTAGAAAT
** * * * * * *
136365 TAATTCGGAAAAA-A-TGGAAAAACGATATTAGAAGCGCGTGAAAAG-CCGGTCAATTTTTTTGG
128 TAATTCGGAAAAAGATTCAAAAAATGATATCA-AA-AGCGAGAAAAGACC-ATCAATCTTTTTGG
* * * *
136427 CGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAACT---------TT
190 CGTTGAATTATATAATTTTTCTGACTATTGTGGCAAAAAATTCAGAAAAAAA-TAAAAAAAAATA
* * * * *
136483 TCCGATCAGTTTTTAGCCGAAATCGTGTACTAACTCATCACGGTTTTTGGCTAAAAACGCGTTCC
254 ACGGGTCAATTTTTAGCCGAAATCGTGTACTAACTCAT--CGGTTTTGGGCTAAAAACGCGTTCC
136548 CGAGCCCCGACTCAA
317 CGAGCCCCGACTCAA
*
136563 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCC
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAACC
* * **
136628 ACATTGGATATAAGGATTTAGTTTTACGAGAATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
66 ACATTAGATATAAAGATTTAGTTTTACGAGAATCTGAAAATTGTTTCGATTTAATTAGAAATTAA
* * *
136693 TTCGGAAAAAGATTCGAAAAATGATATCAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGA
131 TTCGGAAAAAGATTCAAAAAATGATATCAAAAGCGAGAAAAGACCATCAATCTTTTTGGCGTTGA
*
136758 ATTATATAATTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAATAAAAAAAAATAACGGGTC
196 ATTATATAATTTTTCTGACTATTGTGGCAAAAAATTCAGAAAAAAATAAAAAAAAATAACGGGTC
* *
136823 AATTTTTAGCCGAAAATCGTGTACGTTAA-TCAT-GGTTTTGGTGCTAAAAACGCATTTCGGCG-
261 AATTTTTAGCCG-AAATCGTGTAC--TAACTCATCGGTTTTGG-GCTAAAAACGC-GTTC-CCGA
* *
136885 GCCCTGACTCAG
320 GCCCCGACTCAA
* *
136897 TTTTGCATGATTTTTGGCAG-AAAGACTCTTTGAAATATCTATATTCATCTAACCAATCTCAGGC
1 TTTTGCATGATTTTTGGC-GCAAAGACTCCTTGAAATATCTATATTCATCAAACCAA----A---
* * *
136961 TTTCAACCACATTAGATTTAAAGATTT-GTTTTTACGAGTATCTGAAAATTGTTTCGATTTAATT
58 TGTCAACCACATTAGATATAAAGATTTAG-TTTTACGAGAATCTGAAAATTGTTTCGATTTAATT
* * *** * ** *
137025 AGAAA-TATATTCGGGATAAA-ATTTAAAAAATGATATTTCAAGCGAGAAAATA-TTTCAATTTT
122 AGAAATTA-ATTC-GGAAAAAGATTCAAAAAATGATATCAAAAGCGAGAAAAGACCATCAATCTT
* * * * * *****
137087 TTTTGCGTTGAATTGTGTATTTTTTCTGACTATTGTGGCAAAAAAATTGAG-AAAAAAT-TTTTC
185 TTTGGCGTTGAATTATATAATTTTTCTGACTATTGTGGC-AAAAAATTCAGAAAAAAATAAAAAA
*** * ** ** * * * * **
137150 GGGTCA-GTTTTTGCAAAACTTTCGCTGAAATCCTATACTAAC-CATCACGGTTTTTTGCTAAAA
249 AAATAACG--GGT-C-AATTTTTAGCCGAAATCGTGTACTAACTCAT--CGGTTTTGGGCTAAAA
* * * * *
137213 CCACGTTCCAG-GACCCCGGCTCAG
308 ACGCGTTCCCGAG-CCCCGACTCAA
* * * ** *
137237 TTTTGCATGA-TTTTGGCGTAAAGACTCCTTGAAATTTCTATATTCATCGAACCAAATCCCAGCC
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAACC
* * * * * ** *
137301 AAATTCGATTTAACA-ATTTATTTTTACGAGTATCTGAATCTTGTTTCGTTTTAATTAGAAATTA
66 ACATTAGATATAA-AGATTTAGTTTTACGAGAATCTGAAAATTGTTTCGATTTAATTAGAAATTA
* * * *** * * ** * * * *
137365 ATTCAGAAAAAAAATGGTAAAACGATATTAGTAGTGTGAAAA-ATCCTTCAATTTTTTTGGCGTT
130 ATTCGGAAAAAGATTCAAAAAATGATATCAAAAGCGAGAAAAGA-CCATCAATCTTTTTGGCGTT
* * * * *
137429 AAATTATATATTTTTTATGACTATTGTCGCAAAAAATTGAGAAAAAAA
194 GAATTATATAATTTTTCTGACTATTGTGGCAAAAAATTCAGAAAAAAA
137477 AATTTTCGTC
Statistics
Matches: 746, Mismatches: 118, Indels: 92
0.78 0.12 0.10
Matches are distributed among these distances:
324 1 0.00
325 189 0.25
326 10 0.01
327 13 0.02
331 6 0.01
332 99 0.13
333 78 0.10
334 76 0.10
335 8 0.01
336 3 0.00
338 3 0.00
339 50 0.07
340 73 0.10
341 117 0.16
342 20 0.03
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (331 bp):
TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAACC
ACATTAGATATAAAGATTTAGTTTTACGAGAATCTGAAAATTGTTTCGATTTAATTAGAAATTAA
TTCGGAAAAAGATTCAAAAAATGATATCAAAAGCGAGAAAAGACCATCAATCTTTTTGGCGTTGA
ATTATATAATTTTTCTGACTATTGTGGCAAAAAATTCAGAAAAAAATAAAAAAAAATAACGGGTC
AATTTTTAGCCGAAATCGTGTACTAACTCATCGGTTTTGGGCTAAAAACGCGTTCCCGAGCCCCG
ACTCAA
Done.