Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020783.1 Corchorus olitorius cultivar O-4 contig20816, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78837

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
612--680
28
2.5
27
69
6
66
39
13
5
42
1.68
1101--1182
21
3.8
21
81
10
94
31
9
17
41
1.82
1101--1182
22
3.8
23
84
10
95
31
9
17
41
1.82
1230--1493
22
11.8
22
73
12
189
37
9
16
35
1.82
1263--2275
44
22.8
44
67
14
219
36
8
17
37
1.80
1434--1518
22
3.9
22
89
3
109
40
8
12
38
1.74
1537--1590
24
2.4
23
81
9
67
31
16
11
40
1.84
1622--1696
22
3.4
22
74
3
69
38
8
18
34
1.80
1664--1707
22
2.0
22
90
0
70
34
6
15
43
1.74
1751--1849
22
4.5
22
74
2
83
41
7
15
36
1.74
1967--2266
111
2.7
110
76
7
277
36
8
17
38
1.79
1881--2266
22
17.6
21
70
12
195
36
8
17
38
1.79
2288--2420
22
6.2
22
66
13
64
41
9
12
36
1.75
12232--12260
2
14.5
2
100
0
58
51
0
0
48
1.00
15973--16070
29
3.3
29
94
5
178
33
17
10
38
1.83
32511--32909
206
1.9
206
93
0
690
34
18
19
27
1.95
51182--51406
112
2.0
112
97
0
423
46
20
11
21
1.82
53364--53403
21
2.0
20
85
5
53
7
12
5
75
1.18
56512--56559
25
1.9
24
84
16
62
35
25
8
31
1.85
70718--70753
19
1.9
19
88
5
56
38
16
8
36
1.79
72005--72047
15
2.9
15
96
0
77
55
0
0
44
0.99

Tables:   1

The End!