Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020785.1 Corchorus olitorius cultivar O-4 contig20818, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 54763
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Found at i:1567 original size:2 final size:2
Alignment explanation
Indices: 1560--1612 Score: 65
Period size: 2 Copynumber: 27.5 Consensus size: 2
1550 AATTAATTAA
* * *
1560 AT AT AT AT AT AT AT AT -T AT AC AT AT GT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1601 AT AT AT -T AT AT A
1 AT AT AT AT AT AT A
1613 CTAAAATCCC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
1 2 0.04
2 43 0.96
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1856 original size:8 final size:8
Alignment explanation
Indices: 1803--1880 Score: 52
Period size: 8 Copynumber: 9.8 Consensus size: 8
1793 TAGTATACAT
1803 ATATATAC
1 ATATATAC
*
1811 ATGTATATAG
1 A--TATATAC
1821 ATATATAC
1 ATATATAC
* *
1829 CTAAATAC
1 ATATATAC
* *
1837 ATGTGTAC
1 ATATATAC
1845 --ATATAC
1 ATATATAC
1851 ATATATAC
1 ATATATAC
**
1859 ATATATGT
1 ATATATAC
*
1867 ATATATGC
1 ATATATAC
1875 ATATAT
1 ATATAT
1881 TTCAAAAAAA
Statistics
Matches: 53, Mismatches: 13, Indels: 8
0.72 0.18 0.11
Matches are distributed among these distances:
6 4 0.08
8 42 0.79
10 7 0.13
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (8 bp):
ATATATAC
Found at i:2035 original size:8 final size:8
Alignment explanation
Indices: 2006--2155 Score: 62
Period size: 8 Copynumber: 19.5 Consensus size: 8
1996 AAAAAATATT
2006 TATATACA
1 TATATACA
*
2014 TACATACA
1 TATATACA
2022 -AGTATACA
1 TA-TATACA
*
2030 TATATATA
1 TATATACA
2038 TATATACA
1 TATATACA
* * *
2046 CACACACA
1 TATATACA
*
2054 TATATA-T
1 TATATACA
*
2061 TACATA-A
1 TATATACA
**
2068 TATATATG
1 TATATACA
*
2076 TATATATA
1 TATATACA
*
2084 TATATATA
1 TATATACA
**
2092 -ATATTTA
1 TATATACA
*
2099 TACATACA
1 TATATACA
*
2107 TATGTACA
1 TATATACA
*
2115 TATAT-TA
1 TATATACA
*
2122 TGTATA-A
1 TATATACA
*
2129 -ATGTACA
1 TATATACA
*
2136 TGTATACA
1 TATATACA
*
2144 TATATATA
1 TATATACA
2152 TATA
1 TATA
2156 ATAATTAAAT
Statistics
Matches: 104, Mismatches: 31, Indels: 14
0.70 0.21 0.09
Matches are distributed among these distances:
6 3 0.03
7 24 0.23
8 76 0.73
9 1 0.01
ACGTcount: A:0.47, C:0.10, G:0.04, T:0.39
Consensus pattern (8 bp):
TATATACA
Found at i:2036 original size:2 final size:2
Alignment explanation
Indices: 2024--2155 Score: 65
Period size: 2 Copynumber: 68.0 Consensus size: 2
2014 TACATACAAG
* * * * * * *
2024 TA TA CA TA TA TA TA TA TA TA CA CA CA CA CA TA TA TA T- TA CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
2065 TA -A TA TA TA TG TA TA TA TA TA TA TA TA -A TA TT TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * * * *
2105 CA TA TG TA CA TA TA T- TA TG TA TA AA TG TA CA TG TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2146 TA TA TA TA TA
1 TA TA TA TA TA
2156 ATAATTAAAT
Statistics
Matches: 96, Mismatches: 30, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
1 4 0.04
2 92 0.96
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (2 bp):
TA
Found at i:2603 original size:49 final size:49
Alignment explanation
Indices: 2548--2648 Score: 202
Period size: 49 Copynumber: 2.1 Consensus size: 49
2538 CTAATTCCTC
2548 ATAGATTTTAGCCAAATTTAGAGCAATTTAAAGATTTTGGACTAATTTG
1 ATAGATTTTAGCCAAATTTAGAGCAATTTAAAGATTTTGGACTAATTTG
2597 ATAGATTTTAGCCAAATTTAGAGCAATTTAAAGATTTTGGACTAATTTG
1 ATAGATTTTAGCCAAATTTAGAGCAATTTAAAGATTTTGGACTAATTTG
2646 ATA
1 ATA
2649 AATTGTGTAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.39
Consensus pattern (49 bp):
ATAGATTTTAGCCAAATTTAGAGCAATTTAAAGATTTTGGACTAATTTG
Found at i:21992 original size:14 final size:12
Alignment explanation
Indices: 21960--21994 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
21950 CTGTTTCTCA
21960 TTAATTTTTTTT
1 TTAATTTTTTTT
21972 TTAATTTATTTTT
1 TTAATTT-TTTTT
21985 TTAGATTTTT
1 TTA-ATTTTT
21995 ACACTTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.33
13 10 0.48
14 4 0.19
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (12 bp):
TTAATTTTTTTT
Found at i:31706 original size:66 final size:66
Alignment explanation
Indices: 31629--31764 Score: 254
Period size: 66 Copynumber: 2.1 Consensus size: 66
31619 TCTTGTTGGG
* *
31629 ACTTGGGATTTAAAGCGTTTTCAGAAACCCTAATTTGTGTTTTTATGCAAAATCTTTGGCTTTAT
1 ACTTGGGATTTAAAACGCTTTCAGAAACCCTAATTTGTGTTTTTATGCAAAATCTTTGGCTTTAT
31694 A
66 A
31695 ACTTGGGATTTAAAACGCTTTCAGAAACCCTAATTTGTGTTTTTATGCAAAATCTTTGGCTTTAT
1 ACTTGGGATTTAAAACGCTTTCAGAAACCCTAATTTGTGTTTTTATGCAAAATCTTTGGCTTTAT
31760 A
66 A
31761 ACTT
1 ACTT
31765 TTGTGATGCT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 68 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (66 bp):
ACTTGGGATTTAAAACGCTTTCAGAAACCCTAATTTGTGTTTTTATGCAAAATCTTTGGCTTTAT
A
Found at i:32741 original size:67 final size:67
Alignment explanation
Indices: 32660--32793 Score: 259
Period size: 67 Copynumber: 2.0 Consensus size: 67
32650 TAAGATACTT
32660 TGGTAAAATCACAACAGTGGCATTCCTATTATACATTAAGGTATAATGGTGCCATAGAAAAGTTG
1 TGGTAAAATCACAACAGTGGCATTCCTATTATACATTAAGGTATAATGGTGCCATAGAAAAGTTG
32725 GC
66 GC
*
32727 TGGTAAAGTCACAACAGTGGCATTCCTATTATACATTAAGGTATAATGGTGCCATAGAAAAGTTG
1 TGGTAAAATCACAACAGTGGCATTCCTATTATACATTAAGGTATAATGGTGCCATAGAAAAGTTG
32792 GC
66 GC
32794 AATGTGAATT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (67 bp):
TGGTAAAATCACAACAGTGGCATTCCTATTATACATTAAGGTATAATGGTGCCATAGAAAAGTTG
GC
Found at i:35577 original size:481 final size:474
Alignment explanation
Indices: 34682--35629 Score: 1797
Period size: 481 Copynumber: 2.0 Consensus size: 474
34672 GCAGTATTGA
34682 TGTTTTAGAACCATTTTGGATAGACGTTTGCTTTTCTCTGATCTTTAAATCCTTAAATAAACTTT
1 TGTTTTAGAACCATTTTGGATAGACGTTTGCTTTTCTCTGATCTTTAAATCCTTAAATAAACTTT
34747 GCAAATTGGTTTTGACAAAGTATTTTTGAATTTTCGAAACCCTACGCATACGACCCAAATTCATA
66 GCAAATTGGTTTTGACAAAGTATTTTTGAATTTTCGAAACCCTACGCATACGACCCAAATTCATA
*
34812 TCATGTTTTTACGTGTTGGTACTCCTATTATTCATGAAGGTATAATGGTGCCAGTTAGAGCCATT
131 TCATGTTTTTAAGTGTTGGTACTCCTATTATTCATGAAGGTATAATGGTGCCAGTTAGAGCCATT
34877 CGGTGTCAATAAATCTTTAAAGTGTTTAACTTGACATTCCTATTGTGTAGTAAAGTCACAATGGT
196 CGGTGTCAATAAATCTTTAAAGTGTTTAACTTGACATTCCTATTGTGTAGTAAAGTCACAATGGT
34942 GCAAATAAACACAAAATCATGCCTTAAAGTCAGATTTTTTTTCCTTTTTTACATCCTGTTTGTAC
261 GCAAATAAACACAAAATCATGCCTTAAAGTCAGATTTTTTTTCCTTTTTTACATCCTGTTTGTAC
35007 AGGGTGCAGTTTGCCAATTTTGGATTACTTGTTTTGGTCAAGAATAGAATGAAGTTGTTTCATGG
326 AGGGTGCAGTTTGCCAATTTTGGATTACTTGTTTTGGTCAAGAATAGAATGAAGTTGTTTCATGG
*
35072 GTTTTGGTTTAGGAAATATGGTCGGAGGATGTACCCATATTTGAGAAAGCAGATATTATTTATGT
391 GTTTTGGTTTAGGAAATATGGTCGGAGGATGTAACCATATTTGAGAAAGCAGATATTATTTATGT
35137 CCCAAACATAAGCAGATAT
456 CCCAAACATAAGCAGATAT
35156 TGTTTTAGAACCATTTTGGATAGACGTTTGCTTTTCTCTGATCTTTAAATCCTTAAATAAACTTT
1 TGTTTTAGAACCATTTTGGATAGACGTTTGCTTTTCTCTGATCTTTAAATCCTTAAATAAACTTT
*
35221 GCAAATTGGTTTTGACAAAGTTTTTTTGAATTTTCGAAACCCTAAGATTTTCGCATACGACCCAA
66 GCAAATTGGTTTTGACAAAGTATTTTTGAATTTTCGAAACCCT---A----CGCATACGACCCAA
35286 ATTCATATCATGTTTTTAAGTGTTGGTACTCCTATTATTCATGAAGGTATAATGGTGCCAGTTAG
124 ATTCATATCATGTTTTTAAGTGTTGGTACTCCTATTATTCATGAAGGTATAATGGTGCCAGTTAG
*
35351 AGCCATTCGGTGTCAATAAATCTTTAAAGTGTTTAACTTGGCATTCCTATTGTGTAGTAAAGTCA
189 AGCCATTCGGTGTCAATAAATCTTTAAAGTGTTTAACTTGACATTCCTATTGTGTAGTAAAGTCA
35416 CAATGGTGCAAATAAACACAAAATCATGCCTTAAAGTCAGATTTTTTTTCCTTTTTTACATCCTG
254 CAATGGTGCAAATAAACACAAAATCATGCCTTAAAGTCAGATTTTTTTTCCTTTTTTACATCCTG
35481 TTTGTACAGGGTGCAGTTTGCCAATTTTGGATTACTTGTTTTGGTCAAGAATAGAATGAAGTTGT
319 TTTGTACAGGGTGCAGTTTGCCAATTTTGGATTACTTGTTTTGGTCAAGAATAGAATGAAGTTGT
35546 TTCATGGGTTTTGGTTTAGGAAATATGGTCGGAGGATGTAACCATATTTGAGAAAGCAGATATTA
384 TTCATGGGTTTTGGTTTAGGAAATATGGTCGGAGGATGTAACCATATTTGAGAAAGCAGATATTA
35611 TTTATGTCCCAAACATAAG
449 TTTATGTCCCAAACATAAG
35630 TAGAATTTAT
Statistics
Matches: 463, Mismatches: 4, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
474 107 0.23
477 1 0.00
481 355 0.77
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (474 bp):
TGTTTTAGAACCATTTTGGATAGACGTTTGCTTTTCTCTGATCTTTAAATCCTTAAATAAACTTT
GCAAATTGGTTTTGACAAAGTATTTTTGAATTTTCGAAACCCTACGCATACGACCCAAATTCATA
TCATGTTTTTAAGTGTTGGTACTCCTATTATTCATGAAGGTATAATGGTGCCAGTTAGAGCCATT
CGGTGTCAATAAATCTTTAAAGTGTTTAACTTGACATTCCTATTGTGTAGTAAAGTCACAATGGT
GCAAATAAACACAAAATCATGCCTTAAAGTCAGATTTTTTTTCCTTTTTTACATCCTGTTTGTAC
AGGGTGCAGTTTGCCAATTTTGGATTACTTGTTTTGGTCAAGAATAGAATGAAGTTGTTTCATGG
GTTTTGGTTTAGGAAATATGGTCGGAGGATGTAACCATATTTGAGAAAGCAGATATTATTTATGT
CCCAAACATAAGCAGATAT
Found at i:43706 original size:2 final size:2
Alignment explanation
Indices: 43699--43724 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
43689 CTGTAGTAAG
43699 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
43725 CGAACAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45638 original size:320 final size:320
Alignment explanation
Indices: 45004--45759 Score: 914
Period size: 321 Copynumber: 2.3 Consensus size: 320
44994 TGGCAAAAAC
* * * *
45004 ACTCATAAAAATATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCAAGCTTTTAATATCG
1 ACTCAGAAAAA-ATATATAATTCAACTCCAAAAAGATT-GAGGGCTTTTCAAGCTTCTAATATCG
* *
45069 -TTTTTCATATTTTTTTCTGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCACGTAAA
64 TTTTTTC--ATTTTTTTC-GAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACGTAAA
* * * * *
45133 AACAAATCTTTAAATCCAATGTGGCTTAAATTTGATTGGACTAATAAAGATATTTCAAGGAATCT
126 AACAAATCCTCAAATCCAATGTGGCTGAAATTTGATTCGACTAATAAAGATATATCAAGGAATCT
* * *
45198 CAGCACAAAAAACCATGCAAAACAGAGCCGTGACCCCGGAAGGCGTTTTTAGTCAAAAATCCGTG
191 CAGCACAAAAAACCATGCAAAACAGAGCCGGGACCCCGAAAGGCATTTTTAGTCAAAAATCCGTG
* * * * * *
45263 AAGGATAGTCCACGATTTCGGCTGAAAACTGACCCGAAAGTTTCTCTCGA-TTTTTTGCCACAAT
256 AAGGATAGTACACGATTTCGGCTAAAAACCGACCCAAAAGTTTATCTCAATTTTTTTGCCACAAT
* *
45327 ACTCAGAAAAAATATATAATTCAACTCCAAAAAGATTAACGGGCTTTTCACGCTTCTAATATCGT
1 ACTCAGAAAAAATATATAATTCAACTCCAAAAAGATTGA-GGGCTTTTCAAGCTTCTAATATCGT
*
45392 TTTTTCATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACA
65 TTTTTCATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACA
* * * * * **
45457 AATCCTCATATCCAATGTGGCTGACATTTGGTTCGA-TGAATATAGATGA-ATCAAGGAGTCTTT
130 AATCCTCAAATCCAATGTGGCTGAAATTTGATTCGACT-AATAAAGAT-ATATCAAGGAATCTCA
* * ** ** * * * * *
45520 GCGCCAAAAATTA-GCAAAATTGAGCCGGGGCTCTGAAATGCATTTTTAGTCAAAAA-CCGTGAT
193 GCACAAAAAACCATGCAAAACAGAGCCGGGACCCCGAAAGGCATTTTTAGTCAAAAATCCGTGAA
* * *
45583 GGTTAGTACACGATTTTGGCTAAAAACCGACCCAAAAATTTTTATCTCAATTTTTTTGCCACAAT
258 GGATAGTACACGATTTCGGCTAAAAACCGACCC-AAAA-GTTTATCTCAATTTTTTTGCCACAAT
*
45648 ACTCAGAAAAAATATATAATTCAACAT-CAAAAAGATTGATGGGCTTTTCATGCTTCTAATATCG
1 ACTCAGAAAAAATATATAATTCAAC-TCCAAAAAGATTGA-GGGCTTTTCAAGCTTCTAATATCG
* * * *
45712 TTTTTCCGTTTTTTTCGAACTAATTTCTAATTATATCGAAACAAGATT
64 TTTTTTCATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATT
45760 GATATGGGAT
Statistics
Matches: 374, Mismatches: 51, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
318 34 0.09
319 38 0.10
320 111 0.30
321 128 0.34
322 47 0.13
323 16 0.04
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.32
Consensus pattern (320 bp):
ACTCAGAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCAAGCTTCTAATATCGTT
TTTTCATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAA
ATCCTCAAATCCAATGTGGCTGAAATTTGATTCGACTAATAAAGATATATCAAGGAATCTCAGCA
CAAAAAACCATGCAAAACAGAGCCGGGACCCCGAAAGGCATTTTTAGTCAAAAATCCGTGAAGGA
TAGTACACGATTTCGGCTAAAAACCGACCCAAAAGTTTATCTCAATTTTTTTGCCACAAT
Found at i:48190 original size:323 final size:323
Alignment explanation
Indices: 47292--48439 Score: 1500
Period size: 323 Copynumber: 3.5 Consensus size: 323
47282 AAATGAAATA
* *
47292 TTTTCTCGCTT-TAAATATCATTTTTCTATTTTTTTCCGAATCT-ATTTCTAATTAAATCGAAAC
1 TTTTCACGCTTCT-AATATCATTTTTCCATTTTTTTCCGAAT-TAATTTCTAATTAAATCGAAAC
* * * * * *
47355 AATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTTA
64 AAGATTCAGATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCT--G-G---GA-TTTGGTTC
* * * * * *
47420 GATAAATATAGATATTTCAAGGAGT-TTTTCTGCCAAAAATCTTGCAAAACTGAGCCGGGGCCCC
122 GATGAATATAGATATTTCAAGGAGTCTTTGC-GCCAAAAATCATGCAAAATTGAGTCGGGG-CTC
* * * * * * *
47484 CGAAACGCATTTTTAGCCCAAAAACCATGATGGTTAGTATACGATTTTCGGCTAAAAACTGACCC
185 GGAAACGCGTTTTTAG-CCAAAAACCGTGATGGTTAGTACAAGATTTTCGGCTAAAAACTGATCG
** * * * *
47549 GATTTA-TTTTTTCCTGAATTTTTTGCCACAATATTCAGAAAAAATATATAA-TAAACACCAAAA
249 GA-AAAGTTTTTT-CTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAA
* *
47612 AGATTGATGGTC
312 AGATTGACGGGC
* * *
47624 TTTTCATGCTTTTAATATCATTTTTCCAATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAA
1 TTTTCACGCTTCTAATATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAA
* * * * ** *
47689 GATTCAGATGCTCGTAAAAATAAATCCTTATATTC-AATGTGGCTGACATTTGGTTTGATGAATA
66 GATTCAGATGCTCGTAAAAACAAATACTTA-AATCGAACGTGGCTGGGATTTGGTTCGATGAATA
* *
47753 TAGATATTTCAAGGAGTCTTTGCGCCAAAAATTCATGCAAAATTGAGTCGGGGCTCGGGAACCCG
130 TAGATATTTCAAGGAGTCTTTGCGCCAAAAA-TCATGCAAAATTGAGTCGGGGCTCGGAAACGCG
* * * *
47818 TTTTTAGCCAAAAACAGTGATGATTAGTACATGATTTTTGGCTAAAAACTGATCGGAAAAGTTTT
194 TTTTTAGCCAAAAACCGTGATGGTTAGTACAAGATTTTCGGCTAAAAACTGATCGGAAAAGTTTT
47883 TTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGC
259 TTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGC
* * * *
47948 TTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTTTAATTAAATTGAAACAA
1 TTTTCACGCTTCTAATATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAA
* *
48013 GATTCATATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTTTGTTCGATGAATAT
66 GATTCAGATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTTGGTTCGATGAATAT
*
48078 AGATATTTCAAGGAGTCTTTGCGCCAAAATTCATGCAAAATTGAGTCGGGGCTCGGAAACGCGTT
131 AGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCGGAAACGCGTT
* *
48143 TTTAGCCAAAAACCGTGATGGTTAGTACAAGATTTTCGGCCAAAAACTTATCGGAAAAGTTTTTT
196 TTTAGCCAAAAACCGTGATGGTTAGTACAAGATTTTCGGCTAAAAACTGATCGGAAAAGTTTTTT
*
48208 CTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAGGC
261 CTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGC
** * * * *
48271 TTTTCACGCTTCTAATATTGTTTTCCCA-TTTTTTCTGAATTAATTTTTAATTAAATTGAAACAA
1 TTTTCACGCTTCTAATATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAA
* *
48335 GATTCATATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTTTGTTCGATGAATAT
66 GATTCAGATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTTGGTTCGATGAATAT
* * * *
48400 AGATATTTCAAGGAGTATTTACGTCAAAAATCATACAAAA
131 AGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAA
48440 ACAAAAACAA
Statistics
Matches: 736, Mismatches: 72, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
322 135 0.18
323 219 0.30
324 207 0.28
325 52 0.07
326 23 0.03
330 1 0.00
331 1 0.00
332 94 0.13
333 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Consensus pattern (323 bp):
TTTTCACGCTTCTAATATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAA
GATTCAGATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTTGGTTCGATGAATAT
AGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCGGAAACGCGTT
TTTAGCCAAAAACCGTGATGGTTAGTACAAGATTTTCGGCTAAAAACTGATCGGAAAAGTTTTTT
CTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGC
Found at i:49283 original size:556 final size:553
Alignment explanation
Indices: 47961--50645 Score: 3055
Period size: 556 Copynumber: 4.8 Consensus size: 553
47951 TCACACTTCT
* * * * * *
47961 AATATCGTTTTTCCATTTTTTTCCGAAT-TAATTTTTAATTAAATTGAAACAAGATTCATATGCT
1 AATATCATTTTTCTATTTTTTTCCGAATCT-ATTTATAATTAAATCGAAACAATATTCAGATGCT
* * * * * *
48025 CGTAAAAACAAATACTTAAATCGAACGTGGCT--G-G---GA-TTTTGTTCGATGAATATAGATA
65 CGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTTAGATGAATATAGATA
* * *
48083 TTTCAAGGAGTCTTTGCGCCAAAATTCATGCAAAATTGAGTCGGGGCTCGGAAACGCGTTTTTAG
130 TTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAACTGAGCCGGGGCTCGGAAACGCGTTTTTAG
* * * *
48148 CCAAAAACCGTGATGGTTAGTACAAGATTTTCGGCCAAAAACTTATCGGAAAAGTTTTTTCTCAA
195 CCAAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAAACTTATCCGAAAAG-TTTTTCTCAA
48213 TTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAGG-CTTTTCA
259 TTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGAC-GGACTTTTCA
** * * *
48277 CGCTTCTAATATTGTTTTCCCATTTTTTCTGAATTAATTTTTAATTAAATTGAAACAAGATTCAT
323 CGCTTCTAATATCATTTTTCCATTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAG
*
48342 ATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTTTGTTCGATGAATATAGATATT
388 ATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGCATTTTGTTCGATGAATATAGATATT
* *
48407 TCAAGGAGTATTTACGTCAAAAATCATACAAAAACAAAAACAAAATATTTTCGGCAAAAAATACA
453 TCAAGGAGTATTTACGTCAAAAATCATGC----ACAAAAA-AATATATTTTCGGCAAAAAATACA
48472 CAATTCAACGCAAAAAAAATTGAAATA-TTTTCTCGCTTTA
513 CAATTCAACGCAAAAAAAATTGAAATACTTTTCTCGCTTTA
48512 AATATCA-TTTTCTATTTTTTTCCGAATCTATTTATAATTAAATCGAAACAATATTCAGATGCTC
1 AATATCATTTTTCTATTTTTTTCCGAATCTATTTATAATTAAATCGAAACAATATTCAGATGCTC
*
48576 GTAAAAACAAATCATTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTTAGATGAATATAGATAT
66 GTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTTAGATGAATATAGATAT
* * * *
48641 TTCAAGGAGTCTTTGCGCCAAAATTCATGCAAAATTGAGTCGGGGCTCGGGAACGCGTTTTTAGC
131 TTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAACTGAGCCGGGGCTCGGAAACGCGTTTTTAGC
* * * *
48706 C-AAAAGCAGTGATGGTTAGTACACGA-TTTCGGCAAAAAACTTATCGGAAAAGATTTTCTCAAT
196 CAAAAACCA-TGATGGTTAGTACACGATTTTCGGCTAAAAACTTATCCGAAAAGTTTTTCTCAAT
*
48769 TTTTTGCCACAATACTCAGAAAAAATATATAATTCAAGGCCAAAAAGATTGACGGACTTTTCACG
260 TTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGACTTTTCACG
* * * *
48834 CTTCTAATATCGTTTATCCACTTTTTCCCGAATTAATTTTTAATTAAATTGAAACAAGATTTAGA
325 CTTCTAATATCATTTTTCCA-TTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAGA
*
48899 TTCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGCATTTTGTTCGATGAATATAGATATTT
389 TGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGCATTTTGTTCGATGAATATAGATATTT
*
48964 TAAGGAGTATTTACGTCAAAAATCATGCACAAAAAAATATATTTTCGGCAAAAAATACACAATTC
454 CAAGGAGTATTTACGTCAAAAATCATGCACAAAAAAATATATTTTCGGCAAAAAATACACAATTC
* * *
49029 AACGCAACAAAACTTGAAATACTTTTCTTGCTTTA
519 AACGCAAAAAAAATTGAAATACTTTTCTCGCTTTA
*
49064 AATATCATTTTTCTATTTTTTTCCGAATCTATTTCTAATTAAATCGAAACAATATTTCAGATGCT
1 AATATCATTTTTCTATTTTTTTCCGAATCTATTTATAATTAAATCGAAACAATA-TTCAGATGCT
*
49129 CGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTTGTTAGATGAATATAGATA
65 CGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTTAGATGAATATAGATA
* *
49194 TTTCAAGGAGTCTTT-CTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCCGAAACGCGTTTTT
130 TTTCAAGGAGTCTTTGC-GCCAAAAATCATGCAAAACTGAGCCGGGG-CTCGGAAACGCGTTTTT
* * ** ** *
49258 AGCTCAAAAACCATGATGATTAGTACACGATTTTCGGCTAAAAACTGA-CCCTAATTTTTTTTTC
193 AGC-CAAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAAACTTATCCGAAAAGTTTTTCTC
* * * ** * *
49322 AATCTTTTGCCACAACACCCAGAAAAAATATATAATTCAACTTCAAAAAGATTGATGGTCTTTTC
257 AATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGACTTTTC
* * * * *
49387 ACGCTTTTAACATCATTTTTCCAATTTTTTCCGAATTAATTTCTAATTGAATCGAAACAAGATTC
322 ACGCTTCTAATATCATTTTTCC-ATTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAGATTC
* * * * * *
49452 AGATGCTCGTAAAAATAAATCCTTATATTC-AATGTGGCTGGCATTTGGTTTGATGAATATAGAT
386 AGATGCTCGTAAAAACAAATACTTA-AATCGAACGTGGCTGGCATTTTGTTCGATGAATATAGAT
* * * ** * * * *** **** * *
49516 ATTTCAAGAACTCTTTGTGCCAAAAATCATG--C---AAAATTTAGTCGGGGCTCGGAA-ACGCG
450 ATTTCAAGGAGTATTTACGTCAAAAATCATGCACAAAAAAATATATTTTCGGCAAAAAATACACA
* ** ** * * * **
49575 TTTTTA-GTCAAAAACCGTGATTGTTAGTATACGATTTC-GGCTAAA
515 ATTCAACG-CAAAAA---AAATTG--A-AATAC-TTTTCTCGCTTTA
* *
49620 AACTGATCCAAAAAGTTTTTTCTCAATTTTTTTTACGAAT-TAATTTGTAATTAAATCGAAACAA
1 AA-T-AT-C----A--TTTTTCT--A-TTTTTTTCCGAATCT-ATTTATAATTAAATCGAAACAA
* * * *
49684 GATTCAGATGCTCGAAAAAACAAATCCTTAAAT-TCAATGTGGCT--GA--C--A-TTTGGTTTG
53 TATTCAGATGCTCGTAAAAACAAATCCTTAAATCT-AATGTGGCTGAGAGCCTGAGATTGGTTAG
* * * * *
49741 ATGAATATATATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAATTGGGTCGGGGCTCGGG
117 ATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAACTGAGCCGGGGCTCGGA
* * * * * * *
49806 TACGCGTTTTTAGCCAAAACCCGTGATGGTTAGTACAAGA-TTTCAGCTAAAAACTGATCGGAAA
182 AACGCGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAAACTTATCCGAAA
*
49870 AGTTTTTTCTC-ATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTG
247 AG-TTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTG
* * * *
49934 GCGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTCCCCGAATTAATTTTTAATTAAATTG
311 ACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTT-TCCGAATTAATTTTTAATTAAATTG
* * * *
49999 AAACAAGATTCATATGCTCGTAAAAACAAATACTTAAATCGATCGTGGCTGGGATTTTGTTTGAT
375 AAACAAGATTCAGATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGCATTTTGTTCGAT
*
50064 GAATATAGATATTTCAAGGAGTATTTACGTCAAAAATCATGCAAAAACAAAAAAATAATATTTTT
440 GAATATAGATATTTCAAGGAGTATTTACGTCAAAAATCATGC----ACAAAAAAAT-ATATTTTC
*
50129 GGCAAAAAATAGACAATTCAACGCAAAAAAAAATTGAAATACTTTTCTCGCTTTA
500 GGCAAAAAATACACAATTCAACGC-AAAAAAAATTGAAATACTTTTCTCGCTTTA
* * * * *
50184 AATATCATTTTTCTTTTTTTTTTCCGTATCTATTTCTAATTAAATCAAAACAATATTCAGATGAT
1 AATATCATTTTTC-TATTTTTTTCCGAATCTATTTATAATTAAATCGAAACAATATTCAGATGCT
* *
50249 CGTAAAAACAAATCCTTAAATCTAATGTGGCTTAGAGCCTAAGATTGGTTAGATGAATATAGATA
65 CGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTTAGATGAATATAGATA
* * * *
50314 TTTCAAGGTGTCTTT-CTGCCAAAAATCATGCAAAACTGAGCCGAGGCCCCCGAAACGCGTTTTT
130 TTTCAAGGAGTCTTTGC-GCCAAAAATCATGCAAAACTGAGCCG-GGGCTCGGAAACGCGTTTTT
* * **
50378 ATCCCAAAAACCATGA----TAGTACACGATTTTCGGCTAAAAA-TTGA-CCCAAATTTTTTTCT
193 A-GCCAAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAAACTT-ATCCGAAAAGTTTTTCT
** * ** * *
50437 CTGAAGCTTTTGCCACAATACCCAGAAAAAATATATAATTCAACTTCAAAAAGATTGATGGTCTT
256 C--AATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGACTT
* * * *
50502 TTCACGCTT-TTATCATCATTTTTCTAATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG
319 TTCACGCTTCTAAT-ATCATTTTTC-CATTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAG
* * * * * * * * *
50566 ATTCAAATGCTCGTAAATATAAATCCTTATATTC-AATGTGGCTGACATTTGGTTTGATGAATAT
382 ATTCAGATGCTCGTAAAAACAAATACTTA-AATCGAACGTGGCTGGCATTTTGTTCGATGAATAT
*
50630 AGATATTACAAGGAGT
446 AGATATTTCAAGGAGT
50646 CTTTGTGCCA
Statistics
Matches: 1810, Mismatches: 241, Indels: 157
0.82 0.11 0.07
Matches are distributed among these distances:
549 1 0.00
550 88 0.05
551 68 0.04
552 27 0.01
553 120 0.07
554 119 0.07
555 114 0.06
556 386 0.21
557 166 0.09
558 225 0.12
559 42 0.02
560 280 0.15
561 28 0.02
562 13 0.01
563 7 0.00
564 11 0.01
565 10 0.01
566 1 0.00
567 50 0.03
568 42 0.02
569 6 0.00
570 6 0.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (553 bp):
AATATCATTTTTCTATTTTTTTCCGAATCTATTTATAATTAAATCGAAACAATATTCAGATGCTC
GTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTTAGATGAATATAGATAT
TTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAACTGAGCCGGGGCTCGGAAACGCGTTTTTAGC
CAAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAAACTTATCCGAAAAGTTTTTCTCAATT
TTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGACTTTTCACGC
TTCTAATATCATTTTTCCATTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAGATG
CTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGCATTTTGTTCGATGAATATAGATATTTCA
AGGAGTATTTACGTCAAAAATCATGCACAAAAAAATATATTTTCGGCAAAAAATACACAATTCAA
CGCAAAAAAAATTGAAATACTTTTCTCGCTTTA
Found at i:49840 original size:237 final size:236
Alignment explanation
Indices: 49411--49887 Score: 738
Period size: 237 Copynumber: 2.0 Consensus size: 236
49401 ATTTTTCCAA
* * * *
49411 TTTTTTCCGAATTAATTTCTAATTGAATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTT
1 TTTTTTACGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGAAAAAACAAATCCTT
* * *
49476 ATATTCAATGTGGCTGGCATTTGGTTTGATGAATATAGATATTTCAAGAACTCTTTGTGCCAAAA
66 AAATTCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGAACTCTTTGCGCCAAAA
* * * *
49541 ATCATGCAAAATTTAGTCGGGGCTCGGAAACGCGTTTTTAGTCAAAAACCGTGATTGTTAGTATA
131 ATCATGCAAAATTGAGTCGGGGCTCGGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
* *
49606 CGATTTCGGCTAAAAACTGATCCAAAAAGTTTTTTCTCAATT
196 AGATTTCAGCTAAAAACTGATCCAAAAAGTTTTTTCTC-ATT
*
49648 TTTTTTACGAATTAATTTGTAATTAAATCGAAACAAGATTCAGATGCTCGAAAAAACAAATCCTT
1 TTTTTTACGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGAAAAAACAAATCCTT
* * *
49713 AAATTCAATGTGGCTGACATTTGGTTTGATGAATATATATATTTCAAGGAGTCTTTGCGCCAAAA
66 AAATTCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGAACTCTTTGCGCCAAAA
* ** *
49778 ATCATGCAAAATTGGGTCGGGGCTCGGGTACGCGTTTTTAGCCAAAACCCGTGATGGTTAGTACA
131 ATCATGCAAAATTGAGTCGGGGCTCGGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
**
49843 AGATTTCAGCTAAAAACTGATCGGAAAAGTTTTTTCTCATT
196 AGATTTCAGCTAAAAACTGATCCAAAAAGTTTTTTCTCATT
49884 TTTT
1 TTTT
49888 GCCACAATAC
Statistics
Matches: 217, Mismatches: 23, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
236 7 0.03
237 210 0.97
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (236 bp):
TTTTTTACGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGAAAAAACAAATCCTT
AAATTCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGAACTCTTTGCGCCAAAA
ATCATGCAAAATTGAGTCGGGGCTCGGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
AGATTTCAGCTAAAAACTGATCCAAAAAGTTTTTTCTCATT
Found at i:50812 original size:323 final size:318
Alignment explanation
Indices: 50170--51273 Score: 1147
Period size: 323 Copynumber: 3.4 Consensus size: 318
50160 AATTGAAATA
* ** * *
50170 CTTTTCTCGCTTTAAATATCATTTTTCTTTTTTTTTTCCGTATCT-ATTTCTAATTAAATCAAAA
1 CTTTTCACGCTTT-AATATCATTTTTC-CATTTTTTTCCGAAT-TAATTTCTAATTAAATCGAAA
* * * * *
50234 CAATATTCAGATGATCGTAAAAACAAATCCTTAAATCTAATGTGGCTTAGAGCCTAAGATTGGTT
63 CAAGATTCAGATGCTCGTAAAAACAAATACTTAAATCAAATGTGGC-T-GA--C--A-TTTGGTT
* * * * *
50299 AGATGAATATAGATATTTCAAGGTGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGAGGCCCC
121 TGATGAATATAGATA-TTCAAGGTGTCTTTGTGCCAAAAATCATGCAAAATTGAGCCG-GGGCTC
* * * * * *
50364 CGAAACGCGTTTTTATC-CCAAAAAC--CATGATAGTACACGATTTTCGGCTAAAAATTGA-CCC
184 GGGAACGCG-TTTT-TCGCCAAAAACGTGATGTTAGTACACGATTTTCGGCTAAAAACTGATCCA
** ** * *
50425 AAATTTTTTTCTCTGAAGCTTTTGCCACAATACCCAGAAAAAATATATAATTCAACTTCAAAAAG
247 AAAAGTTTTTCTC--AATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACATCAAAAAG
* *
50490 ATTGATGGT
310 ATTGACGGG
* * *
50499 CTTTTCACGCTTTTATCATCATTTTTCTAATTTTTTCCGAATTAATTTCTAATTAAATCGAAACA
1 CTTTTCACGCTTTAAT-ATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACA
* * * * *
50564 AGATTCAAATGCTCGTAAATATAAATCCTTATATTC-AATGTGGCTGACATTTGGTTTGATGAAT
65 AGATTCAGATGCTCGTAAAAACAAATACTTA-AATCAAATGTGGCTGACATTTGGTTTGATGAAT
* * *
50628 ATAGATATTACAAGGAGTCTTTGTGCCAAAAATCTTGCAAAATTGAGTCGGGGCTCGGGAACGCG
129 ATAGATATT-CAAGGTGTCTTTGTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCGGGAACGCG
50693 TTTTTCGCCAAAAAGCGTGATTGTTAGTACACGATTTTCGGCTAAAAACTGATCCAAAAAGTTTT
193 TTTTTCGCCAAAAA-CGTGA-TGTTAGTACACGATTTTCGGCTAAAAACTGATCCAAAAAGTTTT
*
50758 TCTCAATTTTTTGCCACAATACTCAGGAAAAAATATATAATTCAACACCAAAAAGATTGACGGG
256 TCTCAATTTTTTGCCACAATACTCA-GAAAAAATATATAATTCAACATCAAAAAGATTGACGGG
* * **
50822 CTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTTTAATTAAATTTAAACA
1 CTTTTCACGCTT-TAATATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACA
* * * ** * *
50887 AGATTCAGATGCTTGTAAAAACAAATATTTAAATC-GATCGTGGCTGGGATTTTGTTTGATTAAT
65 AGATTCAGATGCTCGTAAAAACAAATACTTAAATCAAAT-GTGGCTGACATTTGGTTTGATGAAT
* ** * * *
50951 ATAGATA-T--A--TTTCAATGCGCTAAAATTCATGCAAAATTGAGCCGGGGCTCGGGAACGCGT
129 ATAGATATTCAAGGTGTCTTTGTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCGGGAACGCGT
* * * **
51011 TTTTAGCC-AAAACAGTGATGATT-GCACACGATTTTCGGCTAAAAACTTATCGGAAAAGTTTTT
194 TTTTCGCCAAAAAC-GTGATG-TTAGTACACGATTTTCGGCTAAAAACTGATCCAAAAAGTTTTT
* * * *
51074 CTTAATTCTTAGCCACAATACTCAGAAAAAATATATAATTCAACGTCAAAAAGATTGACGGG
257 CTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACATCAAAAAGATTGACGGG
* * * * * *
51136 CTTTTCACGCTTCTAACATCATTTTCCCATTTTTTTCCGAATTAATTTTTAAATAGATTGAAACA
1 CTTTTCACGCTT-TAATATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACA
* * * ** * *
51201 AGATTCATATGCTCTTAAAAACAAATACTTAAATCAAACGTGGCTGGGATTTTGTTCGATGAATA
65 AGATTCAGATGCTCGTAAAAACAAATACTTAAATCAAATGTGGCTGACATTTGGTTTGATGAATA
51266 TAGATATT
130 TAGATATT
51274 TTGAGTATTT
Statistics
Matches: 670, Mismatches: 88, Indels: 48
0.83 0.11 0.06
Matches are distributed among these distances:
314 156 0.23
315 62 0.09
316 10 0.01
317 49 0.07
318 2 0.00
319 12 0.02
320 14 0.02
321 55 0.08
322 26 0.04
323 170 0.25
324 17 0.03
326 2 0.00
327 2 0.00
328 68 0.10
329 25 0.04
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (318 bp):
CTTTTCACGCTTTAATATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAA
GATTCAGATGCTCGTAAAAACAAATACTTAAATCAAATGTGGCTGACATTTGGTTTGATGAATAT
AGATATTCAAGGTGTCTTTGTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCGGGAACGCGTTT
TTCGCCAAAAACGTGATGTTAGTACACGATTTTCGGCTAAAAACTGATCCAAAAAGTTTTTCTCA
ATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACATCAAAAAGATTGACGGG
Found at i:51822 original size:555 final size:554
Alignment explanation
Indices: 50966--52389 Score: 1945
Period size: 555 Copynumber: 2.6 Consensus size: 554
50956 TATATTTCAA
*
50966 TGCGCTAAAATTCATGCAAAATTGAGCCGGGGCTCGGGAACGCGTTTTTAGCC-AAAACAGTGAT
1 TGCGCCAAAATTCATGCAAAATTGAGCCGGGGCTCGGGAACGCGTTTTTAGCCAAAAACAGTGAT
* * * * *
51030 GATT-GCACACGATTTTCGGCTAAAAACTTATCGGAAAAGTTTTTCTTAATTCTTAGCCACAATA
66 GGTTAGTACACGATTTTCGGCTAAAAACTTATCGGAAAAGTTTTTCTCAATTTTTTGCCACAATA
*
51094 CTCAGAAAAAATATATAATTCAACGTCAAAAAGATTGACGGGCTTTTCACGCTTCTAACATCATT
131 CTCAGAAAAAATATATAATTCAACGTCAAAAAGATTGACGGACTTTTCACGCTTCTAACATCATT
* * * * *
51159 TTCCCATTTTTTTCCGAATTAATTTTTAAATAGATTGAAACAAGATTCATATGCTCTTAAAAACA
196 TTTCCATTTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAAATGCTCGTAAAAACA
* *
51224 AATACTTAAATCAAACGTGGCTGGGATTTTGTTCGATGAATATAGATATTTT-GAGTATTTATGT
261 AATACTTAAATC-AACGTGGCTGGCATTTTGTTCGATGAATATAGATATTTTAGAGTATTTACGT
*
51288 CAAAAATCATACAAAAACAAAAAAAAAGATATTTTCGGCAAAAAATACACAATTCAAC-GCAAAA
325 CAAAAATCATAC----AC--AAAAAAAGATATTTTCGGCAAAAAATACACAATTCAACAGAAAAA
* *
51352 AAAA-TTGAAATATTTTTCTCGCTTTAAATATCATTTTTC-AATTTTTTTCTGAATCTATTTATA
384 AAAATTTGAAATACTTTTCTCGCTTTAAATATCATTTTTCTAATTTTTTTCCGAATCTATTTATA
*
51415 ATTAAATCGAAACAATATTCAGATGCTCGTAAAAATAAATCATTAAATCTAATGTGGCTGAGAGC
449 ATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATCATTAAATCTAATGTGGCTGAGAGC
*
51480 CTGAGATTGGTTAGATGAGTATAGATATTTCAAGGAGTCTT
514 CTGAGATTGGTTAGATGAATATAGATATTTCAAGGAGTCTT
* *
51521 TGCGCCAAAATTAATGCAAAATTGAGTCGGGGCTCGGGAACGCGTTTTTAGCCAAAAACAGTGAT
1 TGCGCCAAAATTCATGCAAAATTGAGCCGGGGCTCGGGAACGCGTTTTTAGCCAAAAACAGTGAT
* *
51586 GGTTAGTACACGA-TTTCGGCAAAAAACTTATCGGAAAAGATTTTCTCAATTTTTTGCCACAATA
66 GGTTAGTACACGATTTTCGGCTAAAAACTTATCGGAAAAGTTTTTCTCAATTTTTTGCCACAATA
* * * * * *
51650 CTCAGAAAAAATATATAATTCAAGGCCAAAAAGATTTACGGACTTTTCACACTTCTAATATCGTT
131 CTCAGAAAAAATATATAATTCAACGTCAAAAAGATTGACGGACTTTTCACGCTTCTAACATCATT
* * * *
51715 TTTCTA-TTTTTCCCGAATTAATTTTTAATTAAATTGAAACAAGATGT-AGATTCTCGTAAAAAC
196 TTTCCATTTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAGAT-TCAAATGCTCGTAAAAAC
*
51778 AAATACTTAAATCGAACGTGGTTGGCATTTTGTTCGATGAATATAGATATTTTAAGGAGTATTTA
260 AAATACTTAAATC-AACGTGGCTGGCATTTTGTTCGATGAATATAGATATTTT-A-GAGTATTTA
* * * * *
51843 CGTCAAAAATCATGCACAAAAAAATATATTTTCGGCAAAAATTACACTATTCAGCAGAAAAAAAA
322 CGTCAAAAATCATACACAAAAAAAGATATTTTCGGCAAAAAATACACAATTCAACAGAAAAAAAA
* * * *
51908 ATTTGAAATACTTTTCTCGCTTTAAATTTCATTTTTCTATTTTTTTTCCGAATCTATTTCTCATT
387 ATTTGAAATACTTTTCTCGCTTTAAATATCATTTTTCTAATTTTTTTCCGAATCTATTTATAATT
*
51973 AAATCGAAACAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTG
452 AAATCGAAACAATATTCAGATGCTCGTAAAAACAAATCATTAAATCTAATGTGGCTGAGAGCCTG
52038 AGATTGGTTAGATGAATATAGATATTTCAAGGAGTCTT
517 AGATTGGTTAGATGAATATAGATATTTCAAGGAGTCTT
* ** * * *
52076 T-CTGCCAAAAATCATGCAAAACAGAGCCGGGGCCCCCGAAACGCGTTTTTAGCCTAAAAACCA-
1 TGC-GCCAAAATTCATGCAAAATTGAGCCGGGG-CTCGGGAACGCGTTTTTAGCC-AAAAA-CAG
* * * * ** *
52139 TGATGGTTAGTACACGATTTTCCGCTAAAAACTGACCCG-AATTTTTTTCTCTGAATCTTTTGCC
62 TGATGGTTAGTACACGATTTTCGGCTAAAAACTTATCGGAAAAGTTTTTCTC--AATTTTTTGCC
* * * * * *
52203 ACAATACCCAGAAAAAATATATAATTCAACTTCAAAAAGATAGATGGTCTTTTCACGCTTTTAAC
125 ACAATACTCAGAAAAAATATATAATTCAACGTCAAAAAGATTGACGGACTTTTCACGCTTCTAAC
* **
52268 ATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATAAAAACAAGATTCAAATGCTCGTA
190 ATCATTTTTCCATTTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAAATGCTCGTA
* * * * * * *
52333 AAAATAAATCCTTATATTCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTT
255 AAAACAAATACTTA-AATCAACGTGGCTGGCATTTTGTTCGATGAATATAGATATTT
52390 CAAGGAGTCT
Statistics
Matches: 762, Mismatches: 88, Indels: 33
0.86 0.10 0.04
Matches are distributed among these distances:
552 34 0.04
553 9 0.01
554 36 0.05
555 297 0.39
556 141 0.19
557 38 0.05
558 40 0.05
559 75 0.10
560 89 0.12
561 3 0.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (554 bp):
TGCGCCAAAATTCATGCAAAATTGAGCCGGGGCTCGGGAACGCGTTTTTAGCCAAAAACAGTGAT
GGTTAGTACACGATTTTCGGCTAAAAACTTATCGGAAAAGTTTTTCTCAATTTTTTGCCACAATA
CTCAGAAAAAATATATAATTCAACGTCAAAAAGATTGACGGACTTTTCACGCTTCTAACATCATT
TTTCCATTTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAAATGCTCGTAAAAACA
AATACTTAAATCAACGTGGCTGGCATTTTGTTCGATGAATATAGATATTTTAGAGTATTTACGTC
AAAAATCATACACAAAAAAAGATATTTTCGGCAAAAAATACACAATTCAACAGAAAAAAAAATTT
GAAATACTTTTCTCGCTTTAAATATCATTTTTCTAATTTTTTTCCGAATCTATTTATAATTAAAT
CGAAACAATATTCAGATGCTCGTAAAAACAAATCATTAAATCTAATGTGGCTGAGAGCCTGAGAT
TGGTTAGATGAATATAGATATTTCAAGGAGTCTT
Found at i:53192 original size:324 final size:324
Alignment explanation
Indices: 52565--54350 Score: 1455
Period size: 324 Copynumber: 5.4 Consensus size: 324
52555 CCATTTTTTT
* * * *
52565 TTAAATTGAAACAAGATTCAGATGCTTGTAAAAAAAATATACTTAAATCGATCGTGGCTGGGATT
1 TTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAA-ATACTTAAATCGAACGTGGCTGGCATT
* * * *
52630 TTGTTTGATGAATATAAATATTTCAAGGAGTTTTTACGCCAAAATTCATGCAAAATTGAGTCGGG
65 TTGTTCGATGAATATAGATATTTCAAGGAGTATTTACGCCAAAAATCATGCAAAATTGAGTCGGG
* * *
52695 GCTCGGGAACGCGTTTTTAGCCAAAAACAGTAATGATTAGTACATGATTTTCAGCTAAAAACTTA
130 GCTCGGGAACGCGTTTTTAGCCAAAAACAGTGATGATTAGTACACGATTTTCGGCTAAAAACTTA
52760 TCGGAAAAGT-TTTCTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCA
195 TCGGAAAAGTATTT-TTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCA
* * *
52824 AAAATATTGACGGGCTTTTCACGCTTCTAATATCCTTTTCCCATTTTTTTCCGAATTAATTTTTA
259 AAAAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTTCCGAATTAATTTTTA
52889 A
324 A
* * *
52890 TTAAATTGAAATAAGATTCATATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTT
1 TTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGCATTT
* * * * *
52955 TGTTCGATGAATCTAGATATTTGAAGGAGTTTTTGCGCCAAAATTCATGCAAAATTGAGTCGGGG
66 TGTTCGATGAATATAGATATTTCAAGGAGTATTTACGCCAAAAATCATGCAAAATTGAGTCGGGG
53020 CTCGGGAACGCGTTTTTAGCCAAAAACAGTGATGATTAGTACACGATTTTCGGCTAAAAACTTAT
131 CTCGGGAACGCGTTTTTAGCCAAAAACAGTGATGATTAGTACACGATTTTCGGCTAAAAACTTAT
*
53085 CGGAAGAGTATTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAA
196 CGGAAAAGTATTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAA
53150 AAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTTCCGAATTAATTTTTAA
261 AAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTTCCGAATTAATTTTTAA
* *
53214 TTAAATTGAAACAAGATTCATATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTT
1 TTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGCATTT
* * * *
53279 TGTTCGATGAATATAGATATTTCGAGGAGTATTTACGTCAAAAATCATACAAAA-AGAAAAAAAA
66 TGTTCGATGAATATAGATATTTCAAGGAGTATTTACGCCAAAAATCATGCAAAATTG--------
* *** ***** * ** * * * * * * *
53343 TATTTTCGGCAAAAAATACAC-AATTCAACGCAAATAAAATTGAAAT-ATT-TTTCTCGCTTTAA
123 -AGTCGGGGCTCGGGA-ACGCGTTTTTAGC-CAAA-AACAGTG--ATGATTAGTACACG------
* *** * * ** * * ** *
53405 ATATTCAATGTGGCT-GGCATTTGGTTTGATGAATGTAGATATTTCAAGAACTCTTTGTGCCA-A
176 AT-TT---T-CGGCTAAAAACTT-ATCGGA--AAAGT--ATTTTTC-TCAA-T-TTTTTGCCACA
* ** * ***** * *
53468 A-AATCATGCCAAATTGAGTCGGGGCTCGGGTACGCGTTTTTAGACAAAAACCGTTATTGTTTGT
228 ATACTCA-GAAAAAAT-A-T-ATAATTC---AACGC---------CAAAAA--G--ATTG-ATG-
* * * * * * * *
53532 ACACGATTTCGGCTAAAGACTGATCTGAAAAGT-TTTTTCTCAATATTTTTTCCGAATTAATTTG
271 ---GGCTTT--TC-AC-G-CT--TCT-AATA-TCGTTTTC-CCAT-TTTTTTCCGAATTAATTTT
53596 TAA
322 TAA
* * * * * * *
53599 TTAAATCGAAACAAGATTCAGATGCTCGAAAAAACCAATCCTTATATTC-AATGTGGCTGACATT
1 TTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATACTTA-AATCGAACGTGGCTGGCATT
* * * * * * * *
53663 TGGTTTGATGAATATATAAATTTCAAGGAGTCTTTGCGCCAAAGATCATGCAAAATTGGGTCGGG
65 TTGTTCGATGAATATAGATATTTCAAGGAGTATTTACGCCAAAAATCATGCAAAATTGAGTCGGG
* * *
53728 TCTCGGG-ACGCGTTTTTAGCCAAAAACCGTGATG----G-ACACGATTTT-AGCTAAAAACTTA
130 GCTCGGGAACGCGTTTTTAGCCAAAAACAGTGATGATTAGTACACGATTTTCGGCTAAAAACTTA
* * **
53786 TCGGAAAAGT-TTTTTCT-AATTTTTTTGCCACAATACCCAGAAAAAATATATATTTCAACTTCA
195 TCGGAAAAGTATTTTTCTCAA-TTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCA
* * * * * * * *
53849 AAAAGATTGATGGTCTTTTCACGCTTTTAACATCATTTTTCTAATTTTTTCCGAATTAATTTCTA
259 AAAAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTTCCGAATTAATTTTTA
53914 A
324 A
* * * * * *
53915 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTATATTC-AATGTGGCTGACATT
1 TTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATACTTA-AATCGAACGTGGCTGGCATT
* * * * **
53979 TGGTTTGATGAGTATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATTGAGTCGGG
65 TTGTTCGATGAATATAGATATTTCAAGGAGTATTTACGCCAAAAATCATGCAAAATTGAGTCGGG
* * *
54044 GCTTGGGAACGCGTTTTTAGCCAAAAACCGTGATTG-TTAGTACACGA-TTTCGGCAAAAAACTT
130 GCTCGGGAACGCGTTTTTAGCCAAAAACAGTGA-TGATTAGTACACGATTTTCGGCTAAAAACTT
* *
54107 ATCGGAAAA--A-TTTTCTCAACTTTTTGCCACAA-AGCTCAGAAAAAATATATAATTCAAGGCC
194 ATCGGAAAAGTATTTTTCTCAATTTTTTGCCACAATA-CTCAGAAAAAATATATAATTCAACGCC
* * * *
54168 AAAAAGATTGACGGACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCCCGAATTAATTTTT
258 AAAAAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTTCCGAATTAATTTTT
**
54233 GT
323 AA
* * *
54235 TTAAATTGAAACGAGATTTAGATTCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGCATTT
1 TTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGCATTT
* * *
54300 TATTCGATGAATATAGATATTTTAAGGAGTATTTACGTCAAAAATCATGCA
66 TGTTCGATGAATATAGATATTTCAAGGAGTATTTACGCCAAAAATCATGCA
54351 CAAAAAAATA
Statistics
Matches: 1164, Mismatches: 208, Indels: 183
0.75 0.13 0.12
Matches are distributed among these distances:
316 146 0.13
317 28 0.02
318 9 0.01
319 6 0.01
320 190 0.16
321 8 0.01
322 26 0.02
323 2 0.00
324 381 0.33
325 36 0.03
326 3 0.00
330 2 0.00
331 4 0.00
332 10 0.01
333 8 0.01
334 9 0.01
335 9 0.01
336 2 0.00
340 2 0.00
341 2 0.00
344 6 0.01
345 7 0.01
347 5 0.00
348 1 0.00
349 15 0.01
350 16 0.01
351 11 0.01
352 14 0.01
353 1 0.00
354 2 0.00
355 4 0.00
357 10 0.01
358 3 0.00
359 1 0.00
362 2 0.00
363 2 0.00
366 6 0.01
368 1 0.00
369 3 0.00
370 4 0.00
371 2 0.00
372 2 0.00
374 4 0.00
375 11 0.01
376 4 0.00
377 4 0.00
378 1 0.00
379 1 0.00
380 2 0.00
382 3 0.00
383 8 0.01
384 4 0.00
385 117 0.10
386 4 0.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (324 bp):
TTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGCATTT
TGTTCGATGAATATAGATATTTCAAGGAGTATTTACGCCAAAAATCATGCAAAATTGAGTCGGGG
CTCGGGAACGCGTTTTTAGCCAAAAACAGTGATGATTAGTACACGATTTTCGGCTAAAAACTTAT
CGGAAAAGTATTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAA
AAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTTCCGAATTAATTTTTAA
Found at i:54265 original size:320 final size:316
Alignment explanation
Indices: 53576--54350 Score: 1011
Period size: 320 Copynumber: 2.4 Consensus size: 316
53566 TTTTCTCAAT
* * *
53576 ATTTTTTCCGAATTAATTTGTAATTAAATCGAAACAAGATTCAGATGCTCGAAAAAACCAATCCT
1 ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
* *
53641 TATATTCAATGTGGCTGACATTTGGTTTGATGAATATATAAATTTCAAGGAGTCTTTGCGCCAAA
66 TATATTCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAA
* * *
53706 GATCATGCAAAATTGGGTCGGGTCTCGGGACGCGTTTTTAGCCAAAAACCGTGATGGACACGATT
131 AATCATGCAAAATTGAGTCGGGGCTCGGGACGCGTTTTTAGCCAAAAACCGTGATGGACACGATT
* * * * *
53771 TTAGCTAAAAACTTATCGGAAAAGTTTTTTCTAATTTTTTTGCCACAATACCCAGAAAAAATATA
196 TCAGCAAAAAACTTATCGGAAAAATTTTCTCTAATCTTTTTGCCACAATACCCAGAAAAAATATA
* ** * * *
53836 TATTTCAACTTCAAAAAGATTGATGGTCTTTTCACGCTTTTAACATCATTTTTCTA
261 TAATTCAACGCCAAAAAGATTGACGGACTTTTCACGCTTCTAACATCATTTTTCTA
*
53892 ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCT
1 ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
* *
53957 TATATTCAATGTGGCTGACATTTGGTTTGATGAGTATAGATATTTCAAGGAGTCTTTGTGCCAAA
66 TATATTCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAA
*
54022 AATCATGCAAAATTGAGTCGGGGCTTGGGAACGCGTTTTTAGCCAAAAACCGTGATTGTTAGTAC
131 AATCATGCAAAATTGAGTCGGGGCTCGGG-ACGCGTTTTTAGCCAAAAACCGTGA-TG---G-AC
* *
54087 ACGATTTCGGCAAAAAACTTATCGGAAAAATTTTCTC-AA-CTTTTTGCCACAA-AGCTCAGAAA
190 ACGATTTCAGCAAAAAACTTATCGGAAAAATTTTCTCTAATCTTTTTGCCACAATA-CCCAGAAA
* * * *
54149 AAATATATAATTCAAGGCCAAAAAGATTGACGGACTTTTCACGCTTCTAATATCGTTTTTC-C
254 AAATATATAATTCAACGCCAAAAAGATTGACGGACTTTTCACGCTTCTAACATCATTTTTCTA
* ** * * * * *
54211 ATTTTTTCCCGAATTAATTTTTGTTTAAATTGAAACGAGATTTAGATTCTCGTAAAAACAAATAC
1 ATTTTTT-CCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCC
* * * ** * * * * *
54276 TTA-AATCGAACGTGGCTGGCATTTTATTCGATGAATATAGATATTTTAAGGAGTATTTACGTCA
65 TTATATTC-AATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTTGCGCCA
54340 AAAATCATGCA
129 AAAATCATGCA
54351 CAAAAAAATA
Statistics
Matches: 400, Mismatches: 50, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
316 147 0.37
317 25 0.06
318 2 0.00
319 11 0.03
320 178 0.44
321 3 0.01
322 34 0.09
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (316 bp):
ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
TATATTCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAA
AATCATGCAAAATTGAGTCGGGGCTCGGGACGCGTTTTTAGCCAAAAACCGTGATGGACACGATT
TCAGCAAAAAACTTATCGGAAAAATTTTCTCTAATCTTTTTGCCACAATACCCAGAAAAAATATA
TAATTCAACGCCAAAAAGATTGACGGACTTTTCACGCTTCTAACATCATTTTTCTA
Done.