Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020787.1 Corchorus olitorius cultivar O-4 contig20820, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46259

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--861
325
2.7
320
80
10
1023
34
16
15
33
1.90
1540--1576
19
1.9
19
100
0
74
37
13
16
32
1.87
19548--19675
64
2.0
64
95
0
229
37
24
17
20
1.94
20264--20301
2
19.0
2
100
0
76
50
0
0
50
1.00
25168--25219
24
2.2
24
92
0
86
32
26
28
11
1.91
25438--25546
42
2.6
42
97
0
209
25
27
23
22
2.00
25692--25722
2
15.5
2
100
0
62
51
0
0
48
1.00
28441--28466
1
26.0
1
100
0
52
100
0
0
0
0.00
30405--30458
18
3.0
18
94
0
90
27
24
25
22
2.00
30409--30464
18
3.1
17
85
10
67
28
25
21
25
1.99
34174--34198
8
3.1
8
100
0
50
24
0
36
40
1.55
39794--39818
13
1.9
13
100
0
50
16
8
0
76
1.02
40097--40149
28
2.0
27
85
7
72
33
15
11
39
1.83
40339--40365
13
2.1
13
100
0
54
22
7
25
44
1.79
43793--43837
21
2.1
21
88
8
65
62
0
8
28
1.25
45783--45808
13
2.0
13
100
0
52
23
23
7
46
1.78

Tables:   1

The End!