Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020789.1 Corchorus olitorius cultivar O-4 contig20822, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136839

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--83
10
8.7
10
65
20
50
44
0
1
54
1.08
9--83
7
10.6
7
76
18
57
45
0
1
53
1.08
1--43
18
2.4
18
88
11
63
39
0
0
60
0.97
6--64
22
2.7
22
80
17
77
38
0
1
59
1.08
29503--29545
11
3.9
11
81
9
52
74
20
4
0
1.00
29513--29543
16
1.9
16
93
0
53
74
19
6
0
1.03
30962--31006
18
2.7
16
80
12
54
66
2
4
26
1.22
31153--31593
27
16.6
27
88
4
618
34
20
16
28
1.94
31153--31593
183
2.4
185
88
6
644
34
20
16
28
1.94
33141--33190
21
2.5
19
80
6
64
32
20
8
40
1.81
47655--47682
13
2.2
13
100
0
56
35
17
0
46
1.49
51118--51167
2
26.0
2
88
8
77
48
0
2
50
1.12
52014--52149
31
4.4
31
76
1
128
20
22
23
33
1.97
89337--89436
49
2.0
50
98
1
193
39
16
12
33
1.85
102063--102107
20
2.2
20
96
0
81
55
6
8
28
1.56
109287--109330
9
4.9
9
85
0
52
45
34
20
0
1.51
109293--109339
21
2.2
21
92
0
76
46
36
17
0
1.48
109818--109942
30
4.2
30
74
13
105
39
30
21
8
1.84
109839--109966
3
42.7
3
75
3
96
38
31
24
6
1.80
110049--110078
15
2.0
15
93
0
51
40
43
13
3
1.60
115629--115704
11
6.5
11
73
18
55
50
3
3
42
1.39
115650--115726
38
2.0
38
94
0
136
41
3
9
45
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117232--117299
31
2.2
31
84
5
84
30
22
20
26
1.98
123257--123383
62
2.0
62
90
0
200
24
17
19
38
1.93
125888--125920
15
2.1
16
94
5
59
57
12
0
30
1.35
128269--135769
330
22.8
329
77
8
6530
33
14
16
35
1.89

Tables:   1

The End!