genome.fa.s20790.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020790.1 Corchorus olitorius cultivar O-4 contig20823, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165534

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2805--2838	16	2.1	16	94	0	59	52	2	0	44	1.16
4497--4598	51	2.0	52	83	9	129	21	24	13	40	1.90
9965--10008	24	2.0	22	86	13	63	22	29	18	29	1.97
13811--13866	27	2.2	26	80	6	60	19	8	17	53	1.70
17579--17613	15	2.3	15	100	0	70	28	31	5	34	1.81
18596--18884	153	1.9	157	86	4	415	22	19	21	36	1.95
34786--34838	1	53.0	1	100	0	106	100	0	0	0	0.00
42339--42485	74	2.0	74	94	0	258	39	19	9	31	1.83
45814--45884	27	2.6	27	79	0	97	18	23	22	35	1.96
46043--46081	18	2.2	18	100	0	78	35	10	20	33	1.86
46075--46187	59	1.9	59	89	3	176	27	15	15	41	1.87
46578--46633	24	2.3	25	79	11	64	28	23	17	30	1.97
68303--68328	1	26.0	1	100	0	52	0	0	100	0	0.00
69991--70058	34	2.0	34	97	2	129	47	2	17	32	1.63
71635--71689	17	3.2	16	80	10	56	38	16	21	23	1.93
75961--76003	20	2.0	20	82	8	50	44	2	34	18	1.63
76223--76260	11	3.5	11	89	10	51	39	0	2	57	1.12
78559--78602	20	2.2	20	100	0	88	38	9	20	31	1.84
80257--80291	3	11.7	3	100	0	70	0	31	34	34	1.58
82252--82372	56	2.2	55	79	8	129	37	9	16	37	1.81
85584--85615	6	5.5	6	96	3	57	87	0	12	0	0.54
86372--86398	12	2.2	12	100	0	54	22	7	0	70	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89947--90012	28	2.2	31	86	7	93	37	10	22	28	1.88
89963--90036	28	2.5	29	80	8	87	32	13	25	28	1.94
101764--101803	19	2.1	19	95	0	71	35	5	12	47	1.63
127156--127213	29	2.0	29	100	0	116	20	20	20	37	1.94
129879--130036	60	2.6	60	82	5	194	40	13	15	30	1.86
129878--130042	31	5.5	28	65	17	75	39	13	16	30	1.87
130080--130155	31	2.5	31	86	0	107	27	15	15	40	1.88
138232--138258	3	9.0	3	100	0	54	66	0	33	0	0.92
146958--146998	1	41.0	1	100	0	82	0	0	0	100	0.00
158664--159454	333	2.4	327	82	4	918	35	15	14	34	1.88
159782--160682	325	2.7	325	79	6	933	35	16	13	33	1.88
160888--161851	332	3.0	321	78	6	1019	35	17	15	31	1.91
162111--163727	643	2.5	635	86	4	2107	34	17	15	32	1.91
163947--164922	325	3.0	320	77	10	1018	34	17	15	32	1.91

Tables:   1

The End!