genome.fa.s20791.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020791.1 Corchorus olitorius cultivar O-4 contig20824, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  205564

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907--2275	192	1.9	194	87	3	546	33	16	14	35	1.89
2087--8318	323	19.6	312	74	13	3624	35	16	14	33	1.89
4227--8318	325	12.7	312	74	12	2195	35	16	14	33	1.89
4205--8288	957	4.2	934	76	11	2897	35	16	14	33	1.89
10484--10508	12	2.1	12	100	0	50	32	16	16	36	1.90
10665--10730	27	2.9	21	72	23	69	36	18	10	34	1.85
11544--11644	36	3.3	30	86	12	118	12	32	26	27	1.93
11575--11644	27	2.5	28	88	6	97	11	34	27	27	1.91
12027--12061	1	35.0	1	100	0	70	100	0	0	0	0.00
28893--28917	4	6.2	4	100	0	50	76	24	0	0	0.80
31082--31122	22	1.9	21	85	5	55	51	14	12	21	1.75
34577--35107	136	4.0	134	82	7	579	33	17	13	35	1.89
42598--42634	19	1.9	19	88	0	56	24	29	10	35	1.89
42672--42718	22	2.2	22	84	3	60	31	21	10	36	1.88
51212--51273	30	2.1	30	90	0	97	24	22	4	48	1.70
51415--51456	18	2.4	18	80	4	50	38	30	7	23	1.82
52421--52544	63	2.0	63	100	0	248	32	16	15	35	1.91
53840--53898	19	3.0	19	85	9	82	35	8	20	35	1.83
55453--55871	226	1.9	226	90	1	669	35	18	18	28	1.94
65486--65519	2	17.5	2	93	6	61	47	0	0	52	1.00
66536--66574	11	3.6	11	82	6	53	5	15	0	79	0.90
69234--69261	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76163--76187	2	12.5	2	100	0	50	48	0	0	52	1.00
77990--78017	2	14.0	2	100	0	56	50	0	0	50	1.00
80168--80221	27	2.1	26	83	10	67	38	7	0	53	1.29
108600--108686	42	2.1	42	95	0	156	44	14	18	21	1.86
108983--109048	29	2.2	29	94	2	114	57	7	10	24	1.58
127829--127853	2	12.5	2	100	0	50	52	0	0	48	1.00
128456--128495	2	20.0	2	100	0	80	50	0	0	50	1.00
129926--130024	32	3.1	32	67	16	96	40	9	10	40	1.71
133658--133713	16	3.6	16	72	13	53	35	35	16	12	1.86
133661--133728	31	2.2	30	80	12	75	35	38	16	10	1.82
148087--148144	21	2.9	20	84	5	73	27	20	13	37	1.91
152788--152819	4	8.0	4	92	0	55	50	3	0	46	1.17
153062--153136	35	2.1	35	100	0	150	24	17	17	41	1.90
153178--153209	16	2.0	16	93	0	55	53	0	0	46	1.00
153162--153209	19	2.5	19	83	10	62	47	0	0	52	1.00
153337--153371	18	1.9	18	94	0	61	28	8	11	51	1.67
162307--162346	21	2.0	21	85	5	55	20	12	12	55	1.69
176813--176888	38	2.0	38	100	0	152	42	15	10	31	1.81
177603--177725	31	4.0	31	94	0	201	36	22	21	19	1.95
178183--178232	27	1.9	27	92	8	86	12	24	4	60	1.49
183247--183308	30	2.1	30	96	0	115	25	24	4	45	1.73
199345--199369	6	4.2	6	100	0	50	20	32	32	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199466--199519	6	9.3	6	78	15	60	16	31	31	20	1.95
200382--201837	321	4.5	322	87	2	1934	34	16	15	33	1.91
201896--203364	323	4.5	322	84	5	1759	33	16	15	33	1.91
203426--204888	321	4.5	319	84	5	1712	33	17	15	33	1.91
203426--204888	641	2.3	643	87	3	2059	33	17	15	33	1.91
204405--205442	554	1.9	547	81	8	1251	36	15	14	33	1.89

Tables:   1

The End!