Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020792.1 Corchorus olitorius cultivar O-4 contig20825, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80756
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:877 original size:323 final size:321
Alignment explanation
Indices: 1--1138 Score: 1358
Period size: 323 Copynumber: 3.5 Consensus size: 321
* *
1 ACGGGCTGTTCACGCTTCTAATATCGTTTTTCCATAT-TTTTCTGAATTAATTTCTAATTAAATC
1 ACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAT-TCTTTTCCGAATTAATTTCTAATTAAATC
*
65 GAAACAAGATTCAGATGCTCGTAAAAACAAA-TCTTTATATCCAATGTGGCTGACATTTGGCTTG
65 GAAACAAGATTCAGATGCTCGTAAAAACAAATTC-TTATATCCAATGTGGCTGACATTTGGTTTG
* * * * *
129 ATGAATATAGATATTTCAAGGAGTCTTT-CTGCCAAAAATCATGCAAAACTGAGCCGGAGCCCCC
129 ATGAATATAGATA-TTCAAGGAGTCTTTGC-GCCAAAAATCATGCAAAATTGAGTCGG-GGCTCG
* * * *
193 GAAACGCGTTTTTAGCCCAAAAACC---ATGATAACGTACATGATTTTCTG-ATAGAAACTGATC
191 GAAACGCGTTTTTAG-CCAAAAACCGTGATGGTTA-GTACATGA-TTTCGGCA-AAAAACTGATC
** * * * **
254 ---CTA-TT-TTT-TTAAAATTTTTGCCACAATACTAAGAAAAAATATATAATTCAACACCAAAA
252 GGAAAAGTTCTTTCTT-AATTTTTTGCCACAATAGTCAGAAAAAATATATAATTCAATGCCAAAA
313 AGATTG
316 AGATTG
* *** * *
319 ATGTATTTTTCACGCTTTTAATATCATTTTTCCAATTCTTTTCCGAATTAATTTCTAATTAAATC
1 ACGGGCTTTTCACGCTTCTAATATCGTTTTTCC-ATTCTTTTCCGAATTAATTTCTAATTAAATC
* * * *
384 GAAATAAGATTCGGATGCTCGTAAAATCAAATCCTTATATCCAATGTGGCTGACA-TT--TTTGA
65 GAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTATATCCAATGTGGCTGACATTTGGTTTGA
* *
446 TGAATATAGATAATTCAAGGAGTCTTTGCGCCAAAAATCTTGCAAAATTGAGTCGGAGCTCGGGA
130 TGAATATAGAT-ATTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTC-GGA
** * *
511 ATTG-GTTTTTACCCAAAAACCGTGATGGTTAGTACACGATTTCGGCAAAAAACTGATCGGAAAA
193 AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTCGGCAAAAAACTGATCGGAAAA
*
575 GTTCTTTCTCAATTTTTTTGCCACAATAGTCAGAAAAAATATATAATTCAATGCCAAAAAGATTG
258 GTTCTTTCTTAA-TTTTTTGCCACAATAGTCAGAAAAAATATATAATTCAATGCCAAAAAGATTG
* **
640 ACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTGTGAATTAATTTCTAATTAAATCG
1 ACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTCTTTTCCGAATTAATTTCTAATTAAATCG
*
705 AAACAAGATTCAGATGCTCGTAAAAACAAATTCTTATATCCCATGTGGCTGACATTTGGTTTGAT
66 AAACAAGATTCAGATGCTCGTAAAAACAAATTCTTATATCCAATGTGGCTGACATTTGGTTTGAT
* * *
770 GAATATAGATATTCCATGGATTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCGGTAA
131 GAATATAGATATT-CAAGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCGGAAA
* * *
835 CGCGTTTTTTGCCAAAAACCGTGATGGTTTGTACATGATTTCGGCTAAAAACTGATCGGAAAAGT
195 CGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTCGGCAAAAAACTGATCGGAAAAGT
* *
900 TCTTTCTTAATTTTTTGCCACATTAGTCTA-AAAAAGTATATAATTCAATGCCAAAAAGATTG
260 TCTTTCTTAATTTTTTGCCACAATAGTC-AGAAAAAATATATAATTCAATGCCAAAAAGATTG
* * * * * *
962 ATGTGTTTTTCACGCTTCTAATATTGTTTTTCCATATCTTTTCCGAATTAATTTTTAATTAAATT
1 ACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAT-TCTTTTCCGAATTAATTTCTAATTAAATC
* * * * * ** * **
1027 GAAACAAGATTCAGATGCTCGTAAAAATAAATACTTAAATCGAACGTGGCTGGGATTTTGTTCAA
65 GAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTATATCCAATGTGGCTGACATTTGGTTTGA
* * * * * *
1092 TAAATTTAGATATTTCAAGGAGTGTTTACGTCAAAAATCATACAAAA
130 TGAATATAGATA-TTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAA
1139 ACAAAAAAAA
Statistics
Matches: 702, Mismatches: 93, Indels: 45
0.84 0.11 0.05
Matches are distributed among these distances:
314 9 0.01
315 24 0.03
316 65 0.09
317 7 0.01
318 30 0.04
319 79 0.11
320 84 0.12
321 77 0.11
322 86 0.12
323 239 0.34
324 2 0.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (321 bp):
ACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTCTTTTCCGAATTAATTTCTAATTAAATCG
AAACAAGATTCAGATGCTCGTAAAAACAAATTCTTATATCCAATGTGGCTGACATTTGGTTTGAT
GAATATAGATATTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCGGAAAC
GCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTCGGCAAAAAACTGATCGGAAAAGTT
CTTTCTTAATTTTTTGCCACAATAGTCAGAAAAAATATATAATTCAATGCCAAAAAGATTG
Found at i:1593 original size:29 final size:31
Alignment explanation
Indices: 1535--1611 Score: 113
Period size: 29 Copynumber: 2.5 Consensus size: 31
1525 ATACCGTACA
*
1535 GGTCCCTCTACTTACAAAAAGGGATCAATTT
1 GGTCCCTCTACTTACAAAAACGGATCAATTT
* *
1566 GGTCCCCCTAC-TACAAAAACTG-TCAATTT
1 GGTCCCTCTACTTACAAAAACGGATCAATTT
1595 GGTCCCTCTACTTACAA
1 GGTCCCTCTACTTACAA
1612 TTTGGTGTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
29 17 0.41
30 14 0.34
31 10 0.24
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (31 bp):
GGTCCCTCTACTTACAAAAACGGATCAATTT
Found at i:1652 original size:31 final size:29
Alignment explanation
Indices: 1535--1654 Score: 89
Period size: 31 Copynumber: 4.0 Consensus size: 29
1525 ATACCGTACA
*** *
1535 GGTCCCTCTACTTACAAAAAGGGATCAATTT
1 GGTCCCTCTACTTACAAAATCTG-TCAA-TC
* * *
1566 GGTCCCCCTAC-TACAAAAACTGTCAATTT
1 GGTCCCTCTACTTACAAAATCTGTCAA-TC
** *
1595 GGTCCCTCTACTTACAATTTGGTGTCAATC
1 GGTCCCTCTACTTACAAAAT-CTGTCAATC
1625 GAGTCCCTCTACTTAACAAAATCTGTCAAT
1 G-GTCCCTCTACTT-ACAAAATCTGTCAAT
1655 TGATTATCTG
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
29 17 0.23
30 16 0.22
31 35 0.48
32 5 0.07
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (29 bp):
GGTCCCTCTACTTACAAAATCTGTCAATC
Found at i:1964 original size:30 final size:30
Alignment explanation
Indices: 1915--1972 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
1905 GTAATTAGAG
*
1915 GGACCAAATTGACAGTTTTTGT-AGTAGGT
1 GGACCAAATTGACACTTTTTGTAAGTAGGT
*
1944 GGACCAAATTGATCCCTTTTTGTAAGTAG
1 GGACCAAATTGA-CACTTTTTGTAAGTAG
1973 AGGGACCTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 12 0.48
30 8 0.32
31 5 0.20
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (30 bp):
GGACCAAATTGACACTTTTTGTAAGTAGGT
Found at i:3273 original size:318 final size:318
Alignment explanation
Indices: 2588--3696 Score: 1318
Period size: 318 Copynumber: 3.4 Consensus size: 318
2578 AATTTCTATT
* * *
2588 TTTTTTCCGAATCT-ATTTCTAATTAAATCGAAACAATATTCATATGCTCGTAAAAACAAATCCT
1 TTTTTTCCGAAT-TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATACT
* * * * *
2652 TAAATCTAATGTGGCTGAGATCCTGAGATTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-
65 TAAATCGAACGTGGCT--GA--C--A-TTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTG
* * * * * * * * *
2716 CTGCTAAAAATCATCCAAAACTGAGCCGGGGCCCCCGAAACGCGTTTTTAGCCCAAAACCATGAT
123 C-GCCAAAAATCATGCAAAATTGAGTCGGGG-CTCAGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * * ***
2781 GG-T-GTACACGATTTTCGGCTAAAAACTTACCCGAATTTTTTTTTCT-GAATTTTTGCCACAAT
186 GGTTAGTACACGA-TTT--GCTAAAAACTGATCGGAAAAGTTTTTTCTCG-ATTTTTGCCACAAT
** * *
2843 ACTCAGAAAAAATATATAATTCAACACCAGAAAGATTGATGGTCTTTTCACGCTTTTAATATCAT
247 ACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTGATGGTCTTTTCACGCTTCTAATATCAT
2908 TTTTCCAA
312 TTTTCC-A
* *
2916 TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAATCAAATCCTT
1 TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATACTT
* * * * *
2981 ATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAA
66 AAATCGAACGTGGCTGACATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTGCGCCAAAA
* *
3046 ATCATGCAAAATTGAGTCGGAGCTCGGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
131 ATCATGCAAAATTGAGTCGGGGCTCAGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
*
3111 CGATTT-CTAAAAACTGATCGGAAAAGTTTTTTCTCGATTTATTGCCACAATACTCATAAAAAAT
196 CGATTTGCTAAAAACTGATCGGAAAAGTTTTTTCTCGATTT-TTGCCACAATACTCAGAAAAAAT
* * * *
3175 ATATAATTCAATGCTAAAAAGATTGATGGTCTTTGCACGCTTGTAATAT-TTTTTTCCA
260 ATATAATTCAATGCCAAAAAGATTGATGGTCTTTTCACGCTTCTAATATCATTTTTCCA
* * * *
3233 TTTATTCCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAACATATACT
1 TTT-TTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATACT
* ** * * *
3298 TAAATCGAACGCGGCTGGGATTCT-GTTCGATAAATATAGATATTTCAAGAAGTGTTTGAGCCAA
65 TAAATCGAACGTGGCTGACATT-TGGTTCGATAAATATAGATATTTCAAGGAGTCTTTGCGCCAA
*
3362 AAATCATGCAAAATTGAGTCGGGGCTCAGGAACGCGTTTTGAGCCAAAAACCGTGATGGTTAGTA
129 AAATCATGCAAAATTGAGTCGGGGCTCAGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTA
* * * *
3427 CACGATTTCGGCTAAAAACTGATCGGGAAAGCTTTTTCTCAATATTTAGCCACAATACTCAGAAA
194 CACGATTT--GCTAAAAACTGATCGGAAAAGTTTTTTCTCGAT-TTTTGCCACAATACTCAGAAA
* * *
3492 AAATATATAATTCAATGCCAAAAAGATTGACAGG-CTTTTCACACTTCTAATATCGTTTTTCCA
256 AAATATATAATTCAATGCCAAAAAGATTGA-TGGTCTTTTCACGCTTCTAATATCATTTTTCCA
* * *
3555 TTTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAGATGCTTGTAAAAACAAATACT
1 -TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATACT
* ** * * * * *
3620 TAAATCGAACGTGGTTGGGATTTTGTTCGATAAATATTGATATTTCAAGGAGTGTTTACGTCAAA
65 TAAATCGAACGTGGCTGACATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTGCGCCAAA
3685 AATCATGCAAAA
130 AATCATGCAAAA
3697 ACGAAGAAAA
Statistics
Matches: 693, Mismatches: 72, Indels: 38
0.86 0.09 0.05
Matches are distributed among these distances:
317 4 0.01
318 209 0.30
319 67 0.10
320 30 0.04
321 155 0.22
322 148 0.21
323 3 0.00
324 1 0.00
326 2 0.00
327 1 0.00
328 73 0.11
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (318 bp):
TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATACTT
AAATCGAACGTGGCTGACATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTGCGCCAAAA
ATCATGCAAAATTGAGTCGGGGCTCAGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
CGATTTGCTAAAAACTGATCGGAAAAGTTTTTTCTCGATTTTTGCCACAATACTCAGAAAAAATA
TATAATTCAATGCCAAAAAGATTGATGGTCTTTTCACGCTTCTAATATCATTTTTCCA
Found at i:4455 original size:321 final size:318
Alignment explanation
Indices: 3774--4596 Score: 944
Period size: 321 Copynumber: 2.5 Consensus size: 318
3764 TTTGAAATTT
* * * * * *
3774 TTTTCTCGCTTTAAATATCAGTTTT-CTATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAA
1 TTTTCACGCTTTCAATATCATTTTTCCAATTTTTTCCGAATTAATTTTTAATTAAATCGAAACAA
* * *
3838 TATTCAGATGCTCGTCAAAACAAATCCTTAAATCTAATGTGGCTGAGAGTATGAGATTTGTTAGG
66 GATTCAGATGCTCGT-AAAACAAATCCTTAAATCCAATGTGGCTGAGA-TTTG-G-TTTG--A--
* *
3903 TGAATATAGATATTTTAAGGAGTCTTTCTGTCAAACATCATGCAAAACT-ATGTCGGGGCCCCCG
123 TGAATATAGATATTTCAAGGAGTCTTTC-GTCAAAAATCATGCAAAACTGA-GTCGGGGCCCCCG
* * ***
3967 AAACGCGTTTTTAGCCCAAAACCATAACGTACACGATTTTCGGCTAAAAACTTACCCGAATTTTT
186 AAACGCGTTTTTAGCCAAAAACCATAACGTACACGATTTTCGGCTAAAAACTGACCCGAATAAGT
* * *
4032 TTTTTCTAAATTTTTTGCCAGAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGATG
251 TTATTCTAAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGACG
4097 GCC
316 GCC
*
4100 TTTTCACGCTTTCAATATCATTTTTCCAATTTTTTTCAGAATTAATTTTTAATTAAATCGAAACA
1 TTTTCACGCTTTCAATATCATTTTTCCAA-TTTTTTCCGAATTAATTTTTAATTAAATCGAAACA
* * *
4165 AGATTCAGATGCTCGTAAAATCAAATCCTTATATCCAATGTGACTGACATTTGGTTTGATGAATA
65 AGATTCAGATGCTCGTAAAA-CAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTTGATGAATA
* * * * *
4230 TAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGG-CTCGGGAACGCG
129 TAGATATTTCAAGGAGTCTTT-CGTCAAAAATCATGCAAAACTGAGTCGGGGCCCCCGAAACGCG
* * *
4294 TTTTTAGCCAAAAACCGTGATGGTTA-GTACACGA-TTTCGGCTAAAAACTGATCGGAA-AAGTT
193 TTTTTAGCCAAAAACC---A---TAACGTACACGATTTTCGGCTAAAAACTGACCCGAATAAGTT
* ** * *
4356 TATTCTCAATTTTTTGCCACAATACTCAG-AAAAATATATAATTCAATGCGAAAAATATTGACGG
252 TATTCTAAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGACGG
*
4420 GC
317 CC
* * *
4422 TTTTCACGC-TTCTAATATCGTTTTTCC-ATTTTTTCCGAATTAATTTTTAATTAATTTGAAACA
1 TTTTCACGCTTTC-AATATCATTTTTCCAATTTTTTCCGAATTAATTTTTAATTAAATCGAAACA
* * * * ** *
4485 AGATTCAGATGCCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTTTATTCGATGAAT
65 AGATTCAGATG-CTCGT-AAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTTGATGAAT
*
4550 ATAGATATTTCAAGGAGTATTTACGTCAAAAATCATGCAAAACTGAG
128 ATAGATATTTCAAGGAGTCTTT-CGTCAAAAATCATGCAAAACTGAG
4597 CCAGTGCTAA
Statistics
Matches: 428, Mismatches: 55, Indels: 33
0.83 0.11 0.06
Matches are distributed among these distances:
320 67 0.16
321 135 0.32
322 59 0.14
323 30 0.07
324 20 0.05
325 12 0.03
326 25 0.06
327 9 0.02
328 71 0.17
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (318 bp):
TTTTCACGCTTTCAATATCATTTTTCCAATTTTTTCCGAATTAATTTTTAATTAAATCGAAACAA
GATTCAGATGCTCGTAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTTGATGAATATA
GATATTTCAAGGAGTCTTTCGTCAAAAATCATGCAAAACTGAGTCGGGGCCCCCGAAACGCGTTT
TTAGCCAAAAACCATAACGTACACGATTTTCGGCTAAAAACTGACCCGAATAAGTTTATTCTAAA
TTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGACGGCC
Found at i:5146 original size:29 final size:30
Alignment explanation
Indices: 5091--5151 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 30
5081 ATGGTAATAT
* * *
5091 TAATAAAAAAGTTGATTCATCTCAAAAAAA
1 TAATAAAAAAGTTAAATCATCTAAAAAAAA
* *
5121 TAATAAAAAAGTTAAATGA-CTAAAAAGAA
1 TAATAAAAAAGTTAAATCATCTAAAAAAAA
5150 TA
1 TA
5152 CTTCTTAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.61, C:0.07, G:0.08, T:0.25
Consensus pattern (30 bp):
TAATAAAAAAGTTAAATCATCTAAAAAAAA
Found at i:5262 original size:13 final size:13
Alignment explanation
Indices: 5244--5268 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5234 AGTAATAAGA
5244 TAAGATAAGATAG
1 TAAGATAAGATAG
5257 TAAGATAAGATA
1 TAAGATAAGATA
5269 TATATGATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.20, T:0.24
Consensus pattern (13 bp):
TAAGATAAGATAG
Found at i:10154 original size:23 final size:24
Alignment explanation
Indices: 10128--10175 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
10118 ACAATAGCGA
*
10128 CAAAATCATCAAAGC-A-ATGAAAT
1 CAAAATCA-AAAAGCGATATGAAAT
10151 CAAAATCAAAAAGCGATATGAAAT
1 CAAAATCAAAAAGCGATATGAAAT
10175 C
1 C
10176 GGTGAAACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 5 0.23
23 9 0.41
24 8 0.36
ACGTcount: A:0.56, C:0.17, G:0.10, T:0.17
Consensus pattern (24 bp):
CAAAATCAAAAAGCGATATGAAAT
Found at i:19037 original size:11 final size:11
Alignment explanation
Indices: 19021--19045 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
19011 TTTTAACCTC
19021 ATCACAGAACT
1 ATCACAGAACT
19032 ATCACAGAACT
1 ATCACAGAACT
19043 ATC
1 ATC
19046 TTACTTGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.28, G:0.08, T:0.20
Consensus pattern (11 bp):
ATCACAGAACT
Found at i:19231 original size:29 final size:29
Alignment explanation
Indices: 19192--19251 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
19182 CAAATAGATC
19192 ATGCAAATGGTGAGAGGAGAGTAAAATAT
1 ATGCAAATGGTGAGAGGAGAGTAAAATAT
19221 ATGCAAATGGTGAGAGGAGAGTAAAATAT
1 ATGCAAATGGTGAGAGGAGAGTAAAATAT
19250 AT
1 AT
19252 TGGGGGTAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.45, C:0.03, G:0.30, T:0.22
Consensus pattern (29 bp):
ATGCAAATGGTGAGAGGAGAGTAAAATAT
Found at i:46719 original size:41 final size:42
Alignment explanation
Indices: 46648--46729 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 42
46638 TCATTTTTCT
* *
46648 TTTCTTTTTTTTTTTTTTTCGTGACTTCTTCCTAGTAATTTA
1 TTTCTTTGTTTTTTTTTTTCGAGACTTCTTCCTAGTAATTTA
46690 TTTCTTTGTTTTTTTTTTT-GAGA-TATCTTCCTAGTAATTT
1 TTTCTTTGTTTTTTTTTTTCGAGACT-TCTTCCTAGTAATTT
46730 CTATTCTCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
40 1 0.03
41 18 0.49
42 18 0.49
ACGTcount: A:0.13, C:0.12, G:0.09, T:0.66
Consensus pattern (42 bp):
TTTCTTTGTTTTTTTTTTTCGAGACTTCTTCCTAGTAATTTA
Found at i:46773 original size:3 final size:3
Alignment explanation
Indices: 46765--46810 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
46755 AATGTAGTAT
46765 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
46811 AATTGATGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:50811 original size:44 final size:43
Alignment explanation
Indices: 50735--50817 Score: 130
Period size: 44 Copynumber: 1.9 Consensus size: 43
50725 AACCAAGTTG
* * *
50735 ACATTAAAAAGGGAAAAAGACTAATGGGAGGTTGGATTAGGTA
1 ACATTAAAAAGGGAAAAAGACCAATAGGAGGTTAGATTAGGTA
50778 ACATTAAAAAGGGAAAAAAGACCAATAGGAGGTTAGATTA
1 ACATTAAAAAGGG-AAAAAGACCAATAGGAGGTTAGATTA
50818 AGTAGTAAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 13 0.36
44 23 0.64
ACGTcount: A:0.48, C:0.06, G:0.27, T:0.19
Consensus pattern (43 bp):
ACATTAAAAAGGGAAAAAGACCAATAGGAGGTTAGATTAGGTA
Found at i:53767 original size:4 final size:4
Alignment explanation
Indices: 53758--53783 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
53748 ATATTTTATA
53758 TAAT TAAT TAAT TAAT TAAT TAAT TA
1 TAAT TAAT TAAT TAAT TAAT TAAT TA
53784 GAAAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:56575 original size:28 final size:27
Alignment explanation
Indices: 56544--56607 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
56534 CAGCCATGTG
*
56544 TTCTAATATTAAAATGTTCAA-CTCTTAA
1 TTCTAATATTAAAA--TTCAACCTCTGAA
* *
56572 TTCTAACAATTAGAATTCAACCTCTGAA
1 TTCTAA-TATTAAAATTCAACCTCTGAA
56600 TTCTAATA
1 TTCTAATA
56608 GCATTAATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
27 6 0.20
28 18 0.60
29 6 0.20
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (27 bp):
TTCTAATATTAAAATTCAACCTCTGAA
Found at i:77967 original size:336 final size:332
Alignment explanation
Indices: 77043--80737 Score: 4050
Period size: 336 Copynumber: 11.2 Consensus size: 332
77033 CCATATTCAT
* * * * * * * *
77043 TGTGGCCGATATTTGGCTGGATGAATATAGATATTTCAAGAATTCTTTGTGTCGAAAATCATGCA
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGCCAAAAATCATGCA
* * * * * *
77108 AAATTGAGCCGGGGTCTAGAATGTATTTTTAGCCAAAAACCGTGATGATTAGTACATGATTTAGG
66 AAATTGAGCCGGGGTCCAGAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* * *
77173 CCAAAATTTTGCAAAAACTTACCTGAAAAGTTTTTCTACAATTATTTGCCATAATACTCAGAAAA
131 CTAAAATTTTGCAAAAACTTACCCGAAAAGTTTTTCCACAATTATTTGCCATAATACTCAGAAAA
* * * * * *
77238 AATATATAATTAAACGCCAAAAAAATTTATGAGCTTTTCACGCTCCTAATATCATTTTTCCTTTT
196 AATATATAATTCAACGCCAAAAAAATTGACG-GCTTTTCACGCTTCTAATATCGTTTCTCCTTTT
* * *
77303 TTTTCCCCGAATTAATTTCTAATTAAATCGAAACAAAATTTAGATGCTCGTAAAAACAAAACCTT
260 TTTTTCTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAAACCTT
77368 ATATCCAA
325 ATATCCAA
* *
77376 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGCAAAAAATCATGTA
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGCCAAAAATCATGCA
* * *
77441 AAATTGAGCCGGGGTCCAGAACCCATTTTTAGCCAAAAACCATGATGGTTATTACACGATTTCGG
66 AAATTGAGCCGGGGTCCAGAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* * * * * *
77506 CTAAAATTTTGCAAAAACTGATCCGAAAAGTTTGT-CTCAATTCTTTGCCACAATACTCAGAAAA
131 CTAAAATTTTGCAAAAACTTACCCGAAAAGTTTTTCCACAATTATTTGCCATAATACTCAGAAAA
* * * * *
77570 AATATATAATTCAACACCAAAAAAATTGGCGGGCTTTTTATGCTTCTAATATCGTTTCCCCCTTT
196 AATATATAATTCAACGCCAAAAAAATTGAC-GGCTTTTCACGCTTCTAATATCGTTT-CTCC-TT
* *
77635 TTTTTTTCCTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCACGTAAAAACAAAAT
258 TTTTTTT-CTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAAAC
*
77700 CTTATATCCAT
322 CTTATATCCAA
* * * * *
77711 TGTGGCTTAAATTTGGATTGATGAATATAGATATTTCAAGTATTCTTTGCGTCAAAAATCATGCA
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGCCAAAAATCATGCA
* *
77776 AAATTGAGCCGGGTGTCCAGAACGCATTTTTAGTCAAAAACTGTGATGGTTAGTACACGATTTCG
66 AAATTGAGCCGGG-GTCCAGAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * * *
77841 GCTAAAATTTTGCAAAAACTTACCCGAAAAGCTTTTCCAAAATTATTTGCGATAATACTTAGAAA
130 GCTAAAATTTTGCAAAAACTTACCCGAAAAGTTTTTCCACAATTATTTGCCATAATACTCAGAAA
* * * * *
77906 AAATATGTAATTCAACGCCAAAAAAATTGACGGCTTTTTATGCTTATAATATCGTTTCCCCCTTT
195 AAATATATAATTCAACGCCAAAAAAATTGACGGCTTTTCACGCTTCTAATATCGTTT-CTCCTTT
* * * ***
77971 TTTTCTTCCTGGAATTCATTTCTAATTAAATCGAAACAAAATTCAGAGGCTAAAAAAAACAAAAC
259 TTTT-TT-CTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAAAC
*
78036 CTTATATCCAT
322 CTTATATCCAA
*
78047 TTTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGCCAAAAATCATGCA
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGCCAAAAATCATGCA
*
78112 AAATTGAGCCGGGGGTCCAGAACGCTTTTTTAGCCAAAAACCGTGATGGTT-GATACACGATTTC
66 AAATTGAGCC-GGGGTCCAGAACGCATTTTTAGCCAAAAACCGTGATGGTTAG-TACACGATTTC
* *
78176 GGCTAAAATTTTGCAAAATCTTACCAGAAAAGTTTTTCCACAATTATTTGCCATAATACTCAGAA
129 GGCTAAAATTTTGCAAAAACTTACCCGAAAAGTTTTTCCACAATTATTTGCCATAATACTCAGAA
* * * * *
78241 AAAATATATAATTCAACACC-AAAAAATTAACGAGCTTATCACGCTTCTAATATCGTTTTTCC-A
194 AAAATATATAATTCAACGCCAAAAAAATTGACG-GCTTTTCACGCTTCTAATATCGTTTCTCCTT
* * * * *
78304 TTTTTTTCACGAATTAATTTATAATTAAATCGAAACAAAATTCCGATGCACGTAAAACCAAAACC
258 TTTTTTTCTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAAACC
*
78369 TTATA-CCAT
323 TTATATCCAA
* *
78378 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGACAAAAATCATACA
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGCCAAAAATCATGCA
* * * * *
78443 ACATTGAGGCGGGGTCCAGAACGCATTTTTAGCCAAAAACCGAGATGGTTAGTACACAATTTCGC
66 AAATTGAGCCGGGGTCCAGAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
* * * * *
78508 CTGAAATTTTGCCAAAACTTACCCGAAAAGCTTTTCCACAATTATGTGTCATAATACT-A-AAAA
131 CTAAAATTTTGCAAAAACTTACCCGAAAAGTTTTTCCACAATTATTTGCCATAATACTCAGAAAA
* * * *
78571 AA-ATATAATTCAACGCCAAAAAATTTGACGGTCTTTTTACGCTTATAATATCGTTTTTCCTTTT
196 AATATATAATTCAACGCCAAAAAAATTGACGG-CTTTTCACGCTTCTAATATCGTTTCTCC--TT
* * *
78635 TTTTTTTCTCGAATTAATTTCTACTTAAATCGAAACAAAGTTCAGATGCTTGTAAAAACAAAACC
258 TTTTTTTCTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAAACC
78700 TTATATCCAA
323 TTATATCCAA
* * * * *
78710 TGTGGATGAGAATTGGGTCTATGAATATAGATATTTCAAGGAATCTTTGCGCCAAAAATCATGCA
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGCCAAAAATCATGCA
* * *
78775 AAATTGAGCTGGGGTTCCAGAACGCATTTTTAGCCAAAAACAGTGATGGTTAGTACAAGATTTCG
66 AAATTGAGCCGGGG-TCCAGAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* *
78840 GCTAAAATTTTGCAAAAACTTACCCGAAAAGTTTTTCCACAATTATTTGCCATAATACTTAGGAA
130 GCTAAAATTTTGCAAAAACTTACCCGAAAAGTTTTTCCACAATTATTTGCCATAATACTCAGAAA
* * *
78905 AAATATATAATTCAACGCCAAAAAAATTGACGAGCTTTTAACTCTTCTAATATCGTTT-TCCCTA
195 AAATATATAATTCAACGCCAAAAAAATTGACG-GCTTTTCACGCTTCTAATATCGTTTCT-CCTT
* * * *
78969 TTTTTTTCCCGAATTAATTTATGATTAAATCGAAACAAAATTTC-GATGCACGTAAAAACAAAAC
258 TTTTTTTCTCGAATTAATTTCTAATTAAATCGAAACAAAA-TTCAGATGCTCGTAAAAACAAAAC
*
79033 CTTATATCCAT
322 CTTATATCCAA
* * * *
79044 TGTGGCTGTGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTACACCAAAAATCATACA
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGCCAAAAATCATGCA
* * * *
79109 AAATTGAGGCGGGGTTCCAGAATGCATTTTTAGCCAAAAACCGAGATGGTTAGTATACGATTTCG
66 AAATTGAGCCGGGG-TCCAGAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * * * * * *
79174 GCTAAAATTTTGCAAAAACTGATCTG-AAAGTTTGT-CTCAATT-CTTGCCACAATACTCAGAAA
130 GCTAAAATTTTGCAAAAACTTACCCGAAAAGTTTTTCCACAATTATTTGCCATAATACTCAGAAA
* * * * *
79236 AAATATATAATTCAACGCCAATAAAATTAACGGGCTTTTAACGCTTCTAATATCGTTTTTCTTTT
195 AAATATATAATTCAACGCCAAAAAAATTGAC-GGCTTTTCACGCTTCTAATATCGTTTCTCCTTT
* * *
79301 TTTTTTCTTGAAATAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGGAAAAACAAAACCT
259 TTTTTTCTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAAACCT
79366 TATATCCAA
324 TATATCCAA
* * * * * * *
79375 TATGCCAGAGATTTGGTTAGATGAATATAGATATTTC-AGAGAGTCTTT-CTGCCCAAAATCATG
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAG-GATTCTTTGC-GCCAAAAATCATG
** ** * * * *
79438 CAAAATTGAGCCCAGGTCGC-GAAATTCGTTTTTAGCCACAAACCGTGATAGTTATTACACGATT
64 CAAAATTGAGCCGGGGTC-CAG-AACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
* * * *
79502 TCGGCTAAAA-ATTG---------ACCCGAAAAGTTTTGT-CTCAATTTTTTGCCATAATAGTCA
127 TCGGCTAAAATTTTGCAAAAACTTACCCGAAAAGTTTT-TCCACAATTATTTGCCATAATACTCA
* *** * * * * *
79556 GAAAAAATATATATTTCAATAACAGAAAAATTGATTGACGTTGCACGCTTCTAATATCGATTT-T
191 GAAAAAATATATAATTCAACGCCAAAAAAATTGA-CGGCTTTTCACGCTTCTAATATCG-TTTCT
*
79620 CCGTTTGTTTTTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAA
254 CC-----TTTTTTTTTCTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAA
*
79685 AACAAAACCTTAAATCCAA
314 AACAAAACCTTATATCCAA
** * * * * *
79704 TGTACCAGAGATTTGGATCGATGAATATAGATATTT-TAGAGAGTCTTT-CTGCCCAAGATCATG
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAG-GATTCTTTGC-GCCAAAAATCATG
* * * * *
79767 CAAAATTGAGCCTGGGTCGC-GAAACTCGTTTTTAGCAAAAAACC------GTTA-T----GTTT
64 CAAAATTGAGCCGGGGTC-CAG-AACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
* * * * * * *
79820 TC-GC--------T--AAAAACTGACTCGTAAAATTATTTTTCTCGATT-TGTTGCCACAATACT
127 TCGGCTAAAATTTTGCAAAAACTTACCCG-AAAAGT-TTTTCCACAATTAT-TTGCCATAATACT
* * * * * *
79873 CAG-AAAAATATTTAATTCAATGGCAAAAAATTTGGCGGGCTTTTCACGC-TCTTAATATCGTAT
189 CAGAAAAAATATATAATTCAACGCCAAAAAAATTGAC-GGCTTTTCACGCTTC-TAATATCGTTT
* * ** * * *
79936 CACC-ATTTTTTTC-CGAACGAATTTCTAATTAAATCGAAATAAGATTAAGATTG-TCGTAAAAA
252 CTCCTTTTTTTTTCTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGA-TGCTCGTAAAAA
*
79998 CAAATCCTTATATCCAA
316 CAAAACCTTATATCCAA
* * * * * * * *
80015 TGTGGCTAAGATTTGGTTAGATGAGTATAGATATTTCAAGAAGTCTTT-CTACAAAAAATCATGC
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGC-GCCAAAAATCATGC
* * * * * * *
80079 AAAACTGAGCCGGGCCTCGA-AACGCGCGTTTTTATCCAAAAATCGCGATGGTTAGTACACGATT
65 AAAATTGAGCCGGG-GTCCAGAA--CGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
* * *
80143 TCGG--------TT--AAAAACTGACCCGAAAAGTTTTGT-CTCAATT-TGTTGCCATAATAGTC
127 TCGGCTAAAATTTTGCAAAAACTTACCCGAAAAGTTTT-TCCACAATTAT-TTGCCATAATACTC
* * *
80196 AGAAAAAATATATAATTAAACGCCAAAAAAATTGATGGACTTTTCACGCTTCTAATATCGATT-T
190 AGAAAAAATATATAATTCAACGCCAAAAAAATTGACGG-CTTTTCACGCTTCTAATATCGTTTCT
80260 -C-----TTTTC-CGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAA
254 CCTTTTTTTTTCTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAA
80318 AACCTTATATCCAA
319 AACCTTATATCCAA
* * * *
80332 TGTGGCTGAGATTCGAATCGATGAATATAGATATTTCAAGGATTCGTTGCGCCAAAAATCATACA
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGCCAAAAATCATGCA
** *
80397 AAATTGAGCCGGGGTTCCAGAACGCATTTAAAGCCAAAAACCGTGATGGTTAGTACACGATTTCA
66 AAATTGAGCCGGGG-TCCAGAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* *
80462 GCTAAAATTTTGCAAAAACTTACCTGAAAAGTTTTTCTACAATTATTTGCCATAATACTCAGAAA
130 GCTAAAATTTTGCAAAAACTTACCCGAAAAGTTTTTCCACAATTATTTGCCATAATACTCAGAAA
* *
80527 AAATATATAATTCAACGCCAAAAAAATTGACGGGCTTTTTACGCTTCTAATATCGTTT-TTCTTT
195 AAATATATAATTCAACGCCAAAAAAATTGAC-GGCTTTTCACGCTTCTAATATCGTTTCTCCTTT
* * * * **
80591 TTTTTTCTCGAATTAATTTGTAATTAAATCCAAA-AAAATTCTGATGCTCGGAAAAATGAAACCT
259 TTTTTTCTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAAACCT
80655 TATATCCAA
324 TATATCCAA
* * * * * * *
80664 TGTGCCAGAGATTTGGTTAGATGGATATAGATATTT-TAGAGAGTCTTT-CTGCCAAAAATCATG
1 TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAG-GATTCTTTGC-GCCAAAAATCATG
80727 CAAAATTGAGC
64 CAAAATTGAGC
80738 TTGGGTCGCG
Statistics
Matches: 2863, Mismatches: 393, Indels: 213
0.83 0.11 0.06
Matches are distributed among these distances:
310 3 0.00
311 116 0.04
312 29 0.01
316 39 0.01
317 138 0.05
318 63 0.02
319 24 0.01
321 4 0.00
322 35 0.01
323 68 0.02
324 79 0.03
325 4 0.00
326 95 0.03
327 19 0.01
328 41 0.01
329 169 0.06
330 112 0.04
331 381 0.13
332 301 0.11
333 277 0.10
334 215 0.08
335 164 0.06
336 433 0.15
337 54 0.02
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33
Consensus pattern (332 bp):
TGTGGCTGAGATTTGGATCGATGAATATAGATATTTCAAGGATTCTTTGCGCCAAAAATCATGCA
AAATTGAGCCGGGGTCCAGAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
CTAAAATTTTGCAAAAACTTACCCGAAAAGTTTTTCCACAATTATTTGCCATAATACTCAGAAAA
AATATATAATTCAACGCCAAAAAAATTGACGGCTTTTCACGCTTCTAATATCGTTTCTCCTTTTT
TTTTCTCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAAACCTTA
TATCCAA
Done.