Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020794.1 Corchorus olitorius cultivar O-4 contig20827, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52078

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1048
336
3.1
334
83
6
1177
34
16
15
33
1.90
821--845
2
12.5
2
100
0
50
52
0
0
48
1.00
839--3913
303
9.8
303
68
17
1059
35
17
14
33
1.90
1524--2111
295
2.0
298
92
1
975
38
16
15
29
1.90
1819--2624
334
2.4
331
85
4
1079
37
16
13
32
1.88
2976--5175
332
6.7
330
78
7
1859
36
15
14
34
1.87
2711--5175
654
3.8
645
77
8
2019
36
15
14
34
1.87
5524--5561
15
2.4
17
82
13
53
55
2
0
42
1.14
6895--6941
23
2.0
23
91
0
76
27
2
14
55
1.51
7986--8022
15
2.5
15
90
0
56
18
8
29
43
1.79
19906--19939
1
34.0
1
100
0
68
100
0
0
0
0.00
21024--21049
3
8.7
3
100
0
52
34
0
0
65
0.93
36093--36138
2
24.5
2
78
12
53
47
4
47
0
1.21
36086--36123
19
2.0
19
89
0
58
57
0
42
0
0.98
36794--36879
43
2.0
43
97
0
163
26
0
17
55
1.42
38306--38492
24
7.7
24
86
4
187
18
12
51
17
1.75
39186--39210
3
8.3
3
100
0
50
0
0
32
68
0.90
39643--39742
48
2.1
48
90
0
155
37
12
17
34
1.86
43289--43343
26
2.1
26
93
0
92
47
18
16
18
1.83
45916--45955
4
10.2
4
89
5
55
82
17
0
0
0.67
45911--45955
12
4.0
11
83
11
56
84
15
0
0
0.62

Tables:   1

The End!