Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020795.1 Corchorus olitorius cultivar O-4 contig20828, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58408

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
205--282
29
2.6
30
83
4
95
33
21
6
38
1.79
1387--1463
29
2.6
29
85
6
93
37
3
20
37
1.71
5381--5413
7
4.7
7
100
0
66
0
15
0
84
0.61
5778--5842
30
2.2
30
100
0
130
32
6
10
50
1.62
7124--7182
21
3.0
19
83
9
82
33
18
10
37
1.85
7270--7299
8
3.9
8
91
8
53
10
0
0
90
0.47
7270--7298
15
1.9
15
100
0
58
10
0
0
89
0.48
10605--10668
33
1.9
33
87
0
92
31
34
7
26
1.85
13301--13332
16
2.0
16
100
0
64
31
12
12
43
1.80
14543--14598
29
1.9
29
88
0
85
51
3
12
32
1.56
18541--18614
37
2.0
37
97
0
139
28
27
17
27
1.98
21226--21268
22
2.0
22
100
0
86
37
13
9
39
1.78
30442--30494
27
2.0
27
96
0
97
45
0
26
28
1.54
33009--33063
26
2.0
27
86
10
76
49
27
10
12
1.74
44907--44936
11
2.7
11
94
0
51
6
3
10
80
1.01
46137--46189
27
2.0
27
100
0
106
26
11
11
50
1.71

Tables:   1

The End!