Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020796.1 Corchorus olitorius cultivar O-4 contig20829, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57869

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
363--3565
346
9.7
331
83
8
3638
34
16
15
32
1.90
614--4198
982
3.5
989
86
7
4553
35
16
15
32
1.90
3510--3623
58
2.0
58
96
0
210
36
14
7
42
1.72
11201--11594
78
5.1
78
98
0
752
33
24
13
28
1.93
11615--11758
52
2.8
52
83
8
170
31
18
13
36
1.90
18156--18180
2
12.5
2
100
0
50
52
0
0
48
1.00
20833--20862
12
2.6
12
94
5
53
0
0
93
6
0.35
49923--49960
17
2.2
17
90
0
58
68
10
15
5
1.36
52660--52700
19
2.2
19
86
0
55
31
12
14
41
1.83
55937--55974
19
2.0
20
94
5
69
55
21
0
23
1.44
56688--56795
31
3.5
31
69
14
98
34
22
17
25
1.96
56839--56997
60
2.6
59
85
7
221
28
16
17
37
1.92
56898--57001
31
3.4
29
74
10
93
28
17
16
37
1.91
56866--56966
29
3.4
28
71
10
94
28
17
17
35
1.93

Tables:   1

The End!