Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020797.1 Corchorus olitorius cultivar O-4 contig20830, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53903

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
617--659
22
2.0
22
100
0
86
67
13
0
18
1.23
1572--1653
22
3.6
23
71
17
64
56
1
2
40
1.20
5442--5547
54
2.0
54
90
0
167
26
16
28
28
1.97
5521--5578
29
2.0
29
93
0
98
32
18
18
29
1.96
10974--11002
12
2.4
12
100
0
58
27
10
37
24
1.88
12815--12857
21
2.0
21
90
0
68
27
9
16
46
1.77
13024--13055
9
3.6
9
91
0
55
62
0
37
0
0.95
13588--13689
50
2.0
50
98
0
195
19
31
10
38
1.86
13970--14520
22
25.3
22
70
14
195
34
15
9
40
1.80
14318--14437
62
2.0
61
85
5
161
36
18
7
37
1.79
14295--14501
84
2.4
87
81
10
237
37
16
7
38
1.77
14626--15173
22
24.7
22
69
13
270
34
15
9
39
1.81
14601--14767
88
1.9
88
85
2
228
32
13
11
41
1.81
14892--15107
64
3.3
64
78
12
163
36
16
9
37
1.82
14893--15107
89
2.5
87
80
11
246
36
16
9
37
1.82
14893--15177
133
2.2
129
79
10
303
37
17
8
35
1.81
15614--15652
20
2.0
20
85
10
53
64
2
5
28
1.28
18479--18522
2
22.0
2
90
9
72
50
0
2
47
1.13
18479--18522
17
2.6
17
92
7
72
50
0
2
47
1.13
18710--18768
21
2.8
21
75
10
66
27
15
10
47
1.77
18581--18780
22
9.1
22
73
6
138
36
16
8
39
1.79
23300--23372
36
2.0
36
94
0
128
26
12
27
34
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37292--37331
20
2.0
20
100
0
80
45
5
20
30
1.72

Tables:   1

The End!