genome.fa.s20798.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020798.1 Corchorus olitorius cultivar O-4 contig20831, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60919

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20764--20824	27	2.3	27	79	0	77	34	22	13	29	1.92
20785--22262	36	47.0	36	77	16	553	32	26	15	25	1.95
20771--22227	63	23.4	62	73	17	827	31	27	15	25	1.96
20893--21968	27	35.4	27	76	18	616	31	27	16	25	1.96
20893--21968	54	17.7	54	73	21	708	31	27	16	25	1.96
20771--22139	162	8.8	160	74	18	972	31	26	15	25	1.96
22004--22066	27	2.3	27	88	0	90	36	25	12	25	1.91
21905--22165	99	2.6	98	80	7	287	34	25	14	25	1.94
22103--22191	26	3.4	26	86	7	117	33	28	14	23	1.94
22095--22288	97	2.1	92	84	10	254	32	27	12	26	1.93
22227--22513	27	10.4	27	78	7	283	31	27	14	26	1.95
22306--22377	35	2.0	36	86	2	101	36	23	9	30	1.87
22253--22512	89	3.0	89	77	11	297	31	27	14	26	1.95
22762--22840	37	2.2	37	97	2	151	20	2	21	55	1.55
23102--23156	26	2.1	26	100	0	110	18	5	29	47	1.71
23646--23712	31	2.2	31	89	5	102	47	10	19	22	1.79
23832--23908	31	2.5	31	84	2	91	38	15	9	36	1.79
24008--24045	18	2.0	19	90	10	60	39	0	5	55	1.23
24748--24846	31	3.2	31	85	0	126	39	11	14	35	1.81
25059--25114	24	2.2	25	81	12	62	10	12	14	62	1.55
25802--25846	6	7.7	6	87	5	65	84	13	0	2	0.72
31021--31056	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31736--32564	322	2.5	321	82	6	972	34	16	14	33	1.89
34123--34402	140	2.0	140	95	0	506	36	10	23	29	1.88
34691--34779	45	2.0	46	95	2	162	43	21	5	29	1.75
35558--35591	12	2.8	12	91	8	52	58	17	8	14	1.61
44187--44292	30	3.6	29	79	5	104	17	24	24	33	1.97
44187--44264	30	2.6	30	89	2	113	15	25	24	34	1.95
48322--48363	21	2.0	21	90	0	66	16	35	7	40	1.76
48435--48515	32	2.6	32	84	2	110	27	29	25	17	1.97
59416--59558	30	4.7	30	82	3	153	35	20	23	20	1.96
59416--59561	61	2.4	60	80	7	161	35	21	22	20	1.96
59416--59575	30	5.3	30	81	8	137	34	21	23	20	1.97

Tables:   1

The End!