Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000208.1 Corchorus olitorius cultivar O-4 contig00208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32


Found at i:85 original size:15 final size:15

Alignment explanation


    Indices: 68--123  Score: 94
    Period size: 15  Copynumber: 3.7  Consensus size: 15

         58 TGATGACTGT

                          *
         68 TGGGCAGTGGGGTGT
          1 TGGGCAGTGGGGTGC

                           
         83 TGGGCAGTGGGGTGC
          1 TGGGCAGTGGGGTGC

                     *     
         98 TGGGCAGTGTGGTGC
          1 TGGGCAGTGGGGTGC

                       
        113 TGGGCAGTGGG
          1 TGGGCAGTGGG

        124 AGTTTCTTCC


Statistics
Matches: 38,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   38  1.00

ACGTcount: A:0.07, C:0.11, G:0.59, T:0.23


Consensus pattern (15 bp):   
TGGGCAGTGGGGTGC
Done.