Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01002080.1 Corchorus olitorius cultivar O-4 contig02080, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1251

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82--144
2
31.5
2
93
0
90
50
6
0
42
1.27
327--379
22
2.5
22
87
3
72
30
16
1
50
1.56
400--495
45
2.2
44
81
5
113
38
13
13
34
1.84
360--803
22
20.4
22
71
13
210
36
16
9
37
1.81
569--637
23
3.0
23
87
4
95
42
20
2
34
1.67
537--733
105
1.9
104
80
3
234
36
17
7
39
1.77
886--1156
22
12.4
22
70
10
146
32
14
10
43
1.79
910--1079
66
2.6
66
79
4
175
32
14
9
43
1.77
1175--1249
22
3.4
22
79
3
87
42
17
8
32
1.78

Tables:   1

The End!