Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020800.1 Corchorus olitorius cultivar O-4 contig20833, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70631

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3685
330
11.3
330
86
4
4615
33
18
15
31
1.93
3771--4259
269
1.8
268
86
5
709
35
16
12
34
1.87
4024--6476
325
7.6
323
79
9
2100
35
16
14
33
1.90
4046--6195
965
2.2
956
81
6
2328
35
17
14
32
1.90
4045--6472
651
3.8
644
80
8
2037
35
16
14
33
1.89
14030--14086
20
3.1
18
78
16
55
26
1
17
54
1.53
20049--20082
7
4.6
7
86
13
50
44
0
2
52
1.16
50671--50742
36
2.0
36
94
0
126
29
19
20
30
1.97
56758--56789
2
16.0
2
100
0
64
50
0
0
50
1.00
65637--65667
16
1.9
16
93
0
53
29
22
0
48
1.51
67940--67973
14
2.4
14
95
0
59
23
8
0
67
1.18
68732--68757
8
3.2
8
100
0
52
38
11
0
50
1.39
69298--69347
13
3.8
13
73
5
55
32
16
4
48
1.64
69302--69365
27
2.4
27
100
0
128
37
15
4
42
1.68
69315--69361
14
3.4
14
70
5
51
40
17
2
40
1.61
70604--70631
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!