Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020802.1 Corchorus olitorius cultivar O-4 contig20835, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20316
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:6190 original size:29 final size:30

Alignment explanation


    Indices: 6124--6191  Score: 111
    Period size: 30  Copynumber: 2.3  Consensus size: 30

       6114 TTACATCGTA

                      *                   
       6124 CACGTGGCACGCCACGTGTTAAGAAAATGC
          1 CACGTGGCACACCACGTGTTAAGAAAATGC

               *                          
       6154 CACATGGCACACCACGTGTTAA-AAAATGC
          1 CACGTGGCACACCACGTGTTAAGAAAATGC

                     
       6183 CACGTGGCA
          1 CACGTGGCA

       6192 TGGACCCACA


Statistics
Matches: 35,  Mismatches: 3, Indels: 1
        0.90            0.08        0.03

Matches are distributed among these distances:
  29   15  0.43
  30   20  0.57

ACGTcount: A:0.32, C:0.28, G:0.24, T:0.16


Consensus pattern (30 bp):   
CACGTGGCACACCACGTGTTAAGAAAATGC
Done.