Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020803.1 Corchorus olitorius cultivar O-4 contig20836, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20279
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:17954 original size:2 final size:2

Alignment explanation


    Indices: 17947--17973  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

      17937 GCCGGTGTAT

                                                    
      17947 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

      17974 CTTCTTCTTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.