Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020805.1 Corchorus olitorius cultivar O-4 contig20838, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67737

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
642--725
30
2.8
30
79
0
105
50
3
2
44
1.32
1004--1032
12
2.3
13
94
5
51
48
0
13
37
1.43
1684--1806
60
2.1
59
86
8
171
33
14
16
35
1.89
1874--2013
61
2.3
60
84
4
174
37
12
12
36
1.82
4816--5698
331
2.7
332
83
4
1128
34
14
13
37
1.86
5811--5856
22
2.2
21
88
7
67
60
6
0
32
1.22
5853--5914
24
2.8
21
81
13
88
46
22
0
30
1.52
9469--9526
21
2.9
19
84
5
71
39
12
20
27
1.88
14554--14601
17
2.8
17
87
0
60
33
18
22
25
1.97
23225--23455
22
10.4
21
66
14
81
40
9
13
36
1.76
25357--25389
16
2.1
16
100
0
66
45
30
12
12
1.78
30768--30837
29
2.4
30
85
7
90
30
10
27
32
1.89
36044--36099
28
2.0
28
82
10
69
19
8
7
64
1.45
36204--36234
15
2.1
15
93
0
53
48
0
0
51
1.00
37425--39202
660
2.7
649
83
5
2062
32
14
16
36
1.89
47783--47840
3
19.0
3
96
3
107
67
0
0
32
0.91
51947--52051
31
3.4
31
81
5
115
43
20
15
20
1.87

Tables:   1

The End!