Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020806.1 Corchorus olitorius cultivar O-4 contig20839, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10829

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3430--3462
13
2.4
14
90
5
50
81
0
0
18
0.68
3760--5560
31
64.1
27
88
7
1925
30
14
21
33
1.93
3776--3892
16
7.5
15
66
19
53
33
15
16
35
1.90
3781--5560
118
15.9
106
86
9
1825
30
15
21
33
1.93
3760--5560
149
12.8
140
86
9
1960
30
14
21
33
1.93
6419--6644
115
2.0
115
93
0
389
39
16
17
26
1.91
6948--6974
12
2.2
12
100
0
54
29
14
14
40
1.86
6534--9561
657
4.6
650
81
8
3094
34
16
14
33
1.90
6534--9581
972
3.1
949
80
9
2665
35
16
14
33
1.90
9381--9758
200
1.9
199
83
2
497
35
14
13
36
1.85

Tables:   1

The End!