Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020807.1 Corchorus olitorius cultivar O-4 contig20840, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11336
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Found at i:1122 original size:331 final size:319
Alignment explanation
Indices: 1--2815 Score: 2584
Period size: 331 Copynumber: 8.7 Consensus size: 319
* * *
1 GAAAAGTTTTCCATCTA-TTTTTGCCACAATACTCAGAAAAAAATTTATAATTCAACGCCAAAGA
1 GAAAAGTTTTCCCTCTATTTTTTGCCACAATACTTAG-AAAAAATATATAATTCAACGCCAAA-A
* * * * * *
65 AATTGAAGGGTTTTTCACTCTTCTAATATCGTCTTTCCATTTTTTCCGAATTTATTTCTAATTAA
64 AATCGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATTAA
* * * * *
130 ATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTATATCCAAAGTGGTTGAGAATTG-GT
129 ATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGATT
* * * * * ** *
194 CATATGAATATGGACATTTCAAGGCGTCT-TTCTGCCAAAAATCATGCAAACCTGA-ACAGGGAC
194 C-GATGAATATAGATATTTCAAGGAGTCTATGC-GCCAAAAATCATGCAAAATTGAGTCA-GGAC
* * * ** *
257 -CTCGAAACGCGTTTTTAATCAAAAAACCGTGATGGTTAGTACATGAAATCGGCTAAAAACAGAC
256 TC-CGAAACACGTTTTT-AGC-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAC
*
321 CT
318 CC
* *** * * ** * *
323 GAACAGTTTTTTTATCAATTTTTTAGCCACAATTCTCGGAAAAAGTATATAATTCAACACCAAAA
1 GAAAAG-TTTTCCCTCTATTTTTT-GCCACAATACTTAGAAAAAATATATAATTCAACGCC-AAA
** * * *
388 AAAT-TTAGGGCTCTTCACGCTTCTAATATCGTTTTTCCAAATTTTTTTTCGGGA-TAATTTCTT
63 AAATCGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCC--A-TTTTTTTC-GAATTAATTTCTA
*
451 ATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATT
124 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATT
* * * * * *
516 TGGTTCGATGAATATAGGTATTTGAAGGAGTCTTTGCG-CATAAAATCATGCAAAATTGAGCCGG
189 TGATTCGATGAATATAGATATTTCAAGGAGTCTATGCGCCA-AAAATCATGCAAAATTGAGTCAG
* * * * * *
580 GGCTTCGGAACACGTTTTTAGGAAAAAACCGTGATGGATAGTACACAATTTCGGCTAAAAACTGA
253 GACTCCGAAACACGTTTTTA-GCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGA
645 CCC
317 CCC
** * * * *
648 GAAAAGTATTTTTCTC-AATTTTTGCCAGAATACTCAGAAAAAATATATAATTAAACGCCAAAAA
1 GAAAAGT-TTTCCCTCTATTTTTTGCCACAATACTTAGAAAAAATATATAATTCAACGCC-AAAA
* * * * *
712 AATTC-ACGGGCTTTACACGCTTCTAATTTCGTTTTTCCATTTTTTCCGAATTAATTTTTAATTA
64 AA-TCGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATTA
* * *
776 AATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGATGAGATTTGAC
128 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGAT
* * * * *
841 TCGATCAACATAGATATTTCAAGGAGTCTATGCACCAAAAATCATGTAAAATTGAGTCAAGACTC
193 TCGATGAATATAGATATTTCAAGGAGTCTATGCGCCAAAAATCATGCAAAATTGAGTCAGGACTC
* * **
906 CGAAACTCGTTTTTAGCAAAAACTGGTGATGGTTAGTACACGATTTCTACTAAAATTTTGCAAAA
258 CGAAACACGTTTTTAGCAAAAAC-CGTGATGGTTAGTACACGATTTCGGC--------T--AAAA
*
971 ACTGACTC
312 ACTGACCC
* *
979 GAAAAGCTTTCCCTCTATTTTTTGCTACAATACTTAGAAAAAATATATAATTCAACGCCAAATAA
1 GAAAAGTTTTCCCTCTATTTTTTGCCACAATACTTAGAAAAAATATATAATTCAACGCCAAA-AA
* * * *
1044 ATCGAAGGGTTTTTGACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTTATTTCTAACTAAA
65 ATCGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATTAAA
* * *
1109 TCGAAACAAGATTCAGATTCTCGTAAAAACAAATCCTTATATCCAATATGGGCTGAGATTTGGTT
130 TCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGT-GGCTGAGATTTGATT
** * * *
1174 AAATGAATATAAATATTTCAAGGAGTCT-TTCTGCCAAAAATCATGC-AAATCTGA-ACAGGGAC
194 CGATGAATATAGATATTTCAAGGAGTCTATGC-GCCAAAAATCATGCAAAAT-TGAGTCA-GGAC
* * * *
1236 -CTCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTTCATGATTTCGGCTAAAAACTGACC
256 TC-CGAAACACGTTTTTAG-CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACC
*
1300 T
319 C
* *** * * * * ****
1301 GAACAGTTTTGTATCAATTTTTTGCCACAATACTCAGAAAAAGTATAGAATTCAATATTAAAAAG
1 GAAAAGTTTTCCCTCTATTTTTTGCCACAATACTTAGAAAAAATATATAATTCAACGCCAAAAA-
* * * * *
1366 TTTG-AGGGCTTTTCACGCTTCTAATATCGTCTTTCCATTTTTTTTTCCGACTTAATTTCTTATT
65 ATCGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCA--TTTTTTT-CGAATTAATTTCTAATT
* * * *
1430 AAATCGAAACAAGATTCAAATGCTCGTAAACACAAATCCTTATATCCAATGCGGCTGAGATTTGG
127 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGA
* * * * * * *
1495 TTCGATGAATATAGATATTTGAAGGAGTCTTTGCGCAAAAAATTATGCAAAATTAAGTCGGGGCT
192 TTCGATGAATATAGATATTTCAAGGAGTCTATGCGCCAAAAATCATGCAAAATTGAGTCAGGACT
* * *
1560 CCGGAACACATTTTTAGCCGAAAAACCGTGATGGTTAGTACTCGATTTCGGCTAAAAACTGACCC
257 CCGAAACACGTTTTTAG-C-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCC
* * ** ** * ** * *
1625 GAAAA-ATTT---T-T-TTTTCT--CA-GTTTTTTTGCCACAATATATAATTCAATGCCAAAAAG
1 GAAAAGTTTTCCCTCTATTTTTTGCCACAATACTTAGAAAAAATATATAATTCAACGCCAAAAA-
* * * * *
1681 TTTC-ACA-GGCTTTACACGCTTCTAATATTGTCTTTT-CATATTTTTCCGAATTAATTTATAAT
65 -ATCGA-AGGGCTTTTCACGCTTCTAATATCGT-TTTTCCAT-TTTTTTCGAATTAATTTCTAAT
*
1743 TAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTG
126 TAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTG
* * * * *
1808 ACTCGATGAACATAGATATTTCAAGGAGTCTATGCACCAAAAATCATGTAAAAATTGAGTCAAGA
191 ATTCGATGAATATAGATATTTCAAGGAGTCTATGCGCCAAAAATCATG-CAAAATTGAGTCAGGA
* *
1873 CTCCGAAACTCGTTTTTAGCAAAAACCGGTGATGGTTAGTATACGATTTCGGCTAAAATTTTGCA
255 CTCCGAAACACGTTTTTAGCAAAAACC-GTGATGGTTAGTACACGATTTCGGC--------T--A
1938 AAAACTGACCC
309 AAAACTGACCC
*
1949 GAAAAGTTTTCCCTCTATTTTTTG-CACAATACTCT--AAAAAATATATAATTTAACGCCAAAGA
1 GAAAAGTTTTCCCTCTATTTTTTGCCACAATACT-TAGAAAAAATATATAATTCAACGCCAAA-A
* * * * *
2011 ATTTGAAGGG-TTTTCTACGGTTCTAATATCATTTTTCCATTTTTTTTCCGAATTTATTTCTAAT
64 AATCGAAGGGCTTTTC-ACGCTTCTAATATCGTTTTTCCA-TTTTTTT-CGAATTAATTTCTAAT
* * *
2075 TAAATCGAAACAAGATCCAGATACTCGTAAAAACAAATCCTTATATCCAATGTGGCTGCGATTTG
126 TAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTG
* * * * * * * *
2140 ATTCGATGAATGTAGCTATTTGAAGGAGTCTTTGCGCAAAAAATTATGCAAAATTGAGTCGGGGC
191 ATTCGATGAATATAGATATTTCAAGGAGTCTATGCGCCAAAAATCATGCAAAATTGAGTCAGGAC
* * * * *
2205 TCCGGAACACATTTTTAGCCAAAACTGTGATGGTTAGTACTCGATTTCGGCTAAAAACTGACCC
256 TCCGAAACACGTTTTTAGCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCC
*** *
2269 GAAAA-TTTTTTTTCTCAGTTTTTTG-C-C---AC--------AATATATAATTCAATGCCAAAA
1 GAAAAGTTTTCCCTCT-A-TTTTTTGCCACAATACTTAGAAAAAATATATAATTCAACGCCAAAA
* * * * *
2320 AGTTTC-ACA-GGCTTTACACGCTTCTAATATTGTCTTTT-CATATTTTTCCGAATTAATTTATA
64 A--ATCGA-AGGGCTTTTCACGCTTCTAATATCGT-TTTTCCAT-TTTTTTCGAATTAATTTCTA
*
2382 ATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATT
124 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATT
* * * * * *
2447 TGACTCGATGAACATAGATATTTCAAGGAGTCTATGCACCAAAAATCATGTAAAATTGAGCCTGG
189 TGATTCGATGAATATAGATATTTCAAGGAGTCTATGCGCCAAAAATCATGCAAAATTGAGTCAGG
* * * *
2512 ACTCCGGAACTCGTTTTTAGCAAAAATCGGTGATGGTTAGTACTCGATTTCGGCTAAAATTTTGC
254 ACTCCGAAACACGTTTTTAGCAAAAA-CCGTGATGGTTAGTACACGATTTCGGCT---A------
* *
2577 AAAAATGACCT
309 AAAACTGACCC
*
2588 GAAAAGTTTTCCCTCTATTTTTTG-CACAATACTCTA-AAAAAATATATAATTCGAA-ACCAAAG
1 GAAAAGTTTTCCCTCTATTTTTTGCCACAATACT-TAGAAAAAATATATAATTC-AACGCCAAA-
* * *
2650 AAATTGAAGGG-TTTTCTACGCTTCTAATATCATTTTTCCATTTTTTTCCGAATTTATTTCTAAT
63 AAATCGAAGGGCTTTTC-ACGCTTCTAATATCGTTTTTCCATTTTTTT-CGAATTAATTTCTAAT
* * * *
2714 TAAATCGAAACCAGATCCAGATACTCGTAAAAACAAATCCTTATATCCAATGTGGCTGCGATTTG
126 TAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTG
* * *
2779 ATTCGATGAATGTAGATATTTGAAGGAGTCTTTGCGC
191 ATTCGATGAATATAGATATTTCAAGGAGTCTATGCGC
2816 AATGCAAAAT
Statistics
Matches: 2041, Mismatches: 333, Indels: 230
0.78 0.13 0.09
Matches are distributed among these distances:
309 151 0.07
310 69 0.03
311 11 0.01
313 8 0.00
314 139 0.07
315 54 0.03
316 28 0.01
317 6 0.00
318 13 0.01
319 23 0.01
320 36 0.02
321 202 0.10
322 72 0.04
323 154 0.08
324 194 0.10
325 72 0.04
326 129 0.06
327 7 0.00
328 1 0.00
329 17 0.01
330 192 0.09
331 248 0.12
332 207 0.10
333 8 0.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Consensus pattern (319 bp):
GAAAAGTTTTCCCTCTATTTTTTGCCACAATACTTAGAAAAAATATATAATTCAACGCCAAAAAA
TCGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATTAAAT
CGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGATTCG
ATGAATATAGATATTTCAAGGAGTCTATGCGCCAAAAATCATGCAAAATTGAGTCAGGACTCCGA
AACACGTTTTTAGCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCC
Found at i:2297 original size:969 final size:963
Alignment explanation
Indices: 1--2809 Score: 3453
Period size: 969 Copynumber: 2.9 Consensus size: 963
* * *
1 GAAAAGTTTTCCATCTA-TTTTTGCCACAATACTCAGAAAAAAATTTATAATTCAACGCCAAAGA
1 GAAAAGTTTTCCCTCTATTTTTTG-CACAATACTC--TAAAAAATATATAATTCAACGCCAAAGA
* *
65 AATTGAAGGGTTTTTCACTCTTCTAATATCGTCTTTCCA-TTTTTTCCGAATTTATTTCTAATTA
63 AATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTA
* * * * * *
129 AATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTATATCCAAAGTGGTTGAGAATTGGT
128 AATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGTT
* * **
194 CATATGAATATGGAC-ATTTCAAGGCGTCTTTCTGCCAAAAATCATGCAAACCTGAACAGGGACC
193 CA-ATGAATATAG-CTATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAACAGGGACC
* * ** *
258 TCGAAACGCGTTTTTAATCAAAAAACCGTGATGGTTAGTACATGAAATCGGCTAAAAACAGACCT
256 TCGAAACGCGTTTTT-AGC-CAAAACCGTGATGGTTAGTACATGATTTCGGCTAAAAACTGACCT
* *
323 GAACAGTTTTTTTATCAATTTTTTAGCCACAATTCTCGGAAAAAGTATATAATTCAACACCAAAA
319 GAACA-TTTTTTTATCAATTTTTT-GCCACAATACTC-GAAAAAGTATA-AATTCAATA-CAAAA
* * * *
388 AAATTTAGGGCTCTTCACGCTTCTAATATCGTTTTTCCAAATTTTTTTTCGGGA-TAATTTCTTA
379 AAGTTTAGGGCTTTTCACGCTTCTAATATCGTCTTTCC--ATTTTTTTTC-CGATTAATTTCTTA
452 TTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTT
441 TTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTT
* *
517 GGTTCGATGAATATAGGTATTTGAAGGAGTCTTTGCGCATAAAATCATGCAAAATTGAGCCGGGG
506 GGTTCGATGAATATAGATATTTGAAGGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGCCGGGG
* * * *
582 CTTCGGAACACGTTTTTAG-GAAAAAACCGTGATGGATAGTACACAATTTCGGCTAAAAACTGAC
571 CTCCGGAACACGTTTTTAGCG-AAAAACCGTGATGGTTAGTACTCGATTTCGGCTAAAAACTGAC
*
646 CCGAAAAGTATTTTTCTCAATTTTTGCCAGAATACTCAGAAAAAATATATAATTAAACGCCAAAA
635 CCGAAAAG-ATTTTTCT--ATTTCT-CCAGAATACTCAGAAAAAATATATAATTAAACGCCAAAA
* *
711 AAATTCACGGGCTTTACACGCTTCTAATTTCGTTTTTCCATTTTTTCCGAATTAATTTTTAATTA
696 AAATTCACAGGCTTTACACGCTTCTAATTTCGTTTTTCCATTTTTTCCGAATTAATTTATAATTA
776 AATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGATGAGATTTGAC
761 AATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGATGAGATTTGAC
841 TCGATCAACATAGATATTTCAAGGAGTCTATGCACCAAAAATCATGTAAAATTGAGTCAAGACTC
826 TCGATCAACATAGATATTTCAAGGAGTCTATGCACCAAAAATCATGTAAAATTGAGTCAAGACTC
* *
906 CGAAACTCGTTTTTAGCAAAAACTGGTGATGGTTAGTACACGATTTCTACTAAAATTTTGCAAAA
891 CGAAACTCGTTTTTAGCAAAAACCGGTGATGGTTAGTACACGATTTCGACTAAAATTTTGCAAAA
*
971 ACTGACTC
956 ACTGACCC
* *
979 GAAAAGCTTTCCCTCTATTTTTTGCTACAATACT-TAGAAAAAATATATAATTCAACGCCAAATA
1 GAAAAGTTTTCCCTCTATTTTTTGC-ACAATACTCT--AAAAAATATATAATTCAACGCCAAAGA
* * *
1043 AATCGAAGGGTTTTTGACGCTTCTAATATCGTTTTTCCATTTTTTT-CGAATTTATTTCTAACTA
63 AATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTA
* *
1107 AATCGAAACAAGATTCAGATTCTCGTAAAAACAAATCCTTATATCCAATATGGGCTGAGATTTGG
128 AATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTATATCCAATGT-GGCTGAGATTT-G
* **
1172 TTAAATGAATATAAATATTTCAAGGAGTCTTTCTGCCAAAAATCATGC-AAATCTGAACAGGGAC
191 TTCAATGAATATAGCTATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAAT-TGAACAGGGAC
* *
1236 CTCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTTCATGATTTCGGCTAAAAACTGACCT
255 CTCGAAACGCGTTTTTAGCC-AAAACCGTGATGGTTAGTACATGATTTCGGCTAAAAACTGACCT
* * **
1301 GAACAGTTTTGTATCAATTTTTTGCCACAATACTCAGAAAAAGTATAGAATTCAATATTAAAAAG
319 GAACATTTTTTTATCAATTTTTTGCCACAATACTC-GAAAAAGTATA-AATTCAATACAAAAAAG
1366 TTTGAGGGCTTTTCACGCTTCTAATATCGTCTTTCCATTTTTTTTTCCGACTTAATTTCTTATTA
382 TTT-AGGGCTTTTCACGCTTCTAATATCGTCTTTCCA-TTTTTTTTCCGA-TTAATTTCTTATTA
* *
1431 AATCGAAACAAGATTCAAATGCTCGTAAACACAAATCCTTATATCCAATGCGGCTGAGATTTGGT
444 AATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGT
* * *
1496 TCGATGAATATAGATATTTGAAGGAGTCTTTGCGCAAAAAATTATGCAAAATTAAGTCGGGGCTC
509 TCGATGAATATAGATATTTGAAGGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGCCGGGGCTC
*
1561 CGGAACACATTTTTAGCCGAAAAACCGTGATGGTTAGTACTCGATTTCGGCTAAAAACTGACCCG
574 CGGAACACGTTTTTAG-CGAAAAACCGTGATGGTTAGTACTCGATTTCGGCTAAAAACTGACCCG
* ** ** ** * * * **
1626 AAAA-ATTTTT-T-TTTCT-CAG-TTTTTTTGCCACAATATATAATTCAATGCCAAAAAGTTTCA
638 AAAAGATTTTTCTATTTCTCCAGAATACTCAGAAAAAATATATAATTAAACGCCAAAAAAATTCA
1686 CAGGCTTTACACGCTTCTAATATT-GTCTTTT-CATATTTTTCCGAATTAATTTATAATTAAATC
703 CAGGCTTTACACGCTTCTAAT-TTCGT-TTTTCCAT-TTTTTCCGAATTAATTTATAATTAAATC
*
1749 GAAATAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGACTCGA
765 GAAATAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGATGAGATTTGACTCGA
*
1814 TGAACATAGATATTTCAAGGAGTCTATGCACCAAAAATCATGTAAAAATTGAGTCAAGACTCCGA
830 TCAACATAGATATTTCAAGGAGTCTATGCACCAAAAATCATGT-AAAATTGAGTCAAGACTCCGA
* *
1879 AACTCGTTTTTAGCAAAAACCGGTGATGGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAACT
894 AACTCGTTTTTAGCAAAAACCGGTGATGGTTAGTACACGATTTCGACTAAAATTTTGCAAAAACT
1944 GACCC
959 GACCC
* *
1949 GAAAAGTTTTCCCTCTATTTTTTGCACAATACTCTAAAAAATATATAATTTAACGCCAAAGAATT
1 GAAAAGTTTTCCCTCTATTTTTTGCACAATACTCTAAAAAATATATAATTCAACGCCAAAGAAAT
* *
2014 TGAAGGG-TTTTCTACGGTTCTAATATCATTTTTCCATTTTTTTTCCGAATTTATTTCTAATTAA
66 TGAAGGGTTTTTC-ACGCTTCTAATATCGTTTTTCCA-TTTTTTTCCGAATTTATTTCTAATTAA
* *
2078 ATCGAAACAAGATCCAGATACTCGTAAAAACAAATCCTTATATCCAATGTGGCTGCGATTTGATT
129 ATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTG-TT
* * * * * * *
2143 CGATGAATGTAGCTATTTGAAGGAGTCTTTGC-GCAAAAAATTATGCAAAATTGAGTC-GGG-GC
193 CAATGAATATAGCTATTTCAAGGAGTCTTT-CTGCCAAAAATCATGCAAAATTGA-ACAGGGACC
* * * * *
2205 TCCGGAACACATTTTTAGCCAAAACTGTGATGGTTAGTAC-TCGATTTCGGCTAAAAACTGACCC
256 T-CGAAACGCGTTTTTAGCCAAAACCGTGATGGTTAGTACAT-GATTTCGGCTAAAAACTGACCT
* * * * *
2269 GAAAATTTTTTTTCTCAGTTTTTTGCCAC-A-A-T------A-TAT-AATTCAATGCCAAAAAGT
319 GAACA-TTTTTTTATCAATTTTTTGCCACAATACTCGAAAAAGTATAAATTCAATACAAAAAAGT
* * * * * * *
2323 TTCACAGGCTTTACACGCTTCTAATATTGTCTTTTCA-TATTTTTCCGAATTAATTTATAATTAA
383 TT-A-GGGCTTTTCACGCTTCTAATATCGTCTTTCCATTTTTTTTCCG-ATTAATTTCTTATTAA
* * **
2387 ATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGACT
445 ATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTT
* * * * * * * *
2452 CGATGAACATAGATATTTCAAGGAGTCTATGCACCAAAAATCATGTAAAATTGAGCCTGGACTCC
510 CGATGAATATAGATATTTGAAGGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGCCGGGGCTCC
* *
2517 GGAACTCGTTTTTAGC-AAAAATCGGTGATGGTTAGTACTCGATTTCGGCTAAAATTTTGCAAAA
575 GGAACACGTTTTTAGCGAAAAA-CCGTGATGGTTAGTACTCGATTTCGGCT---A------AAAA
* * * * *
2581 ATGACCTGAAAAG-TTTTCCCTCTATTTTTTGCACAATACTCTA-AAAAAATATATAATTCGAAA
630 CTGACCCGAAAAGATTTT---TCTA-TTTCTCCAGAATACTC-AGAAAAAATATATAATT--AAA
* * * * * * *
2644 --CCAAAGAAATTGA-AGGGTTTTCTACGCTTCTAATATCATTTTTCCATTTTTTTCCGAATTTA
688 CGCCAAAAAAATTCACAGGCTTTAC-ACGCTTCTAATTTCGTTTTTCCA-TTTTTTCCGAATTAA
* ** * * *
2706 TTTCTAATTAAATCGAAACCAGATCCAGATACTCGTAAAAACAAATCCTTATATCCAATGTGGCT
751 TTTATAATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGAT
* * * ** *
2771 GCGATTTGATTCGATGAATGTAGATATTTGAAGGAGTCT
816 GAGATTTGACTCGATCAACATAGATATTTCAAGGAGTCT
2810 TTGCGCAATG
Statistics
Matches: 1597, Mismatches: 175, Indels: 125
0.84 0.09 0.07
Matches are distributed among these distances:
953 5 0.00
954 28 0.02
955 148 0.09
956 19 0.01
957 29 0.02
958 3 0.00
959 1 0.00
963 18 0.01
966 2 0.00
967 7 0.00
968 154 0.10
969 249 0.16
970 196 0.12
971 148 0.09
972 1 0.00
973 2 0.00
974 4 0.00
975 23 0.01
976 210 0.13
977 63 0.04
978 189 0.12
979 95 0.06
980 3 0.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Consensus pattern (963 bp):
GAAAAGTTTTCCCTCTATTTTTTGCACAATACTCTAAAAAATATATAATTCAACGCCAAAGAAAT
TGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTAAAT
CGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGTTCAA
TGAATATAGCTATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAACAGGGACCTCGAA
ACGCGTTTTTAGCCAAAACCGTGATGGTTAGTACATGATTTCGGCTAAAAACTGACCTGAACATT
TTTTTATCAATTTTTTGCCACAATACTCGAAAAAGTATAAATTCAATACAAAAAAGTTTAGGGCT
TTTCACGCTTCTAATATCGTCTTTCCATTTTTTTTCCGATTAATTTCTTATTAAATCGAAACAAG
ATTCAAATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATA
GATATTTGAAGGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACACGTTT
TTAGCGAAAAACCGTGATGGTTAGTACTCGATTTCGGCTAAAAACTGACCCGAAAAGATTTTTCT
ATTTCTCCAGAATACTCAGAAAAAATATATAATTAAACGCCAAAAAAATTCACAGGCTTTACACG
CTTCTAATTTCGTTTTTCCATTTTTTCCGAATTAATTTATAATTAAATCGAAATAAGATTCAGAT
GCTCGTAAAAACAAATCCTTATATCCAATGTGGATGAGATTTGACTCGATCAACATAGATATTTC
AAGGAGTCTATGCACCAAAAATCATGTAAAATTGAGTCAAGACTCCGAAACTCGTTTTTAGCAAA
AACCGGTGATGGTTAGTACACGATTTCGACTAAAATTTTGCAAAAACTGACCC
Found at i:6980 original size:249 final size:249
Alignment explanation
Indices: 6531--7020 Score: 770
Period size: 249 Copynumber: 2.0 Consensus size: 249
6521 CAAGACTCAA
* * *
6531 ATGCTCGAAAAACAAATCCTTATATCCAATTTGGCTGAGATTTGGTTTGATGAATATAGATATTT
1 ATGCTCGAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATAAATATAGATATTT
* * * *
6596 GAAGGAGTCTTCGCGCAAAAAATTATGCAAAATTGAGCCGGGGCTTCGGAACACGTTTTTAGCCA
66 AAAGGAGTCTTCGCGCAAAAAATTATGCAAAATTAAGCCGGGGCTCCGGAACACATTTTTAGCCA
*
6661 AAAATCGTGATGGTTAGTACACGATTTTCGGCTAAAAACTGACCCGAAAATTTTTTTTTCTCAAT
131 AAAACCGTGATGGTTAGTACACGATTTTCGGCTAAAAACTGACCCGAAAATTTTTTTTTCTCAAT
** * *
6726 TTTTGCCGGAATACTCA-TAAAATATATATAATTCAACGCCAAAAAAAATTCAG
196 TTTTGCCACAATACTCAGAAAAAAATATATAATTCAACGCCAAAAAAAATTCAG
*
6779 ATGCTCGTAAAAGCAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATAAATATAGATATT
1 ATGCTCG-AAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATAAATATAGATATT
* * * *
6844 TAAAGGATTCTTTGCGCCAAAAATTATGCAAAATTAAGTCGGGGCTCCGGAACACATTTTTAGCC
65 TAAAGGAGTCTTCGCGCAAAAAATTATGCAAAATTAAGCCGGGGCTCCGGAACACATTTTTAGCC
*
6909 -AAAACCGTGATGGTTAGTACTCGA-TTTCGGCTAAAAACTGACCCGAAAAGTTTTTTTTTCTCA
130 AAAAACCGTGATGGTTAGTACACGATTTTCGGCTAAAAACTGACCCGAAAA-TTTTTTTTTCTCA
6972 ATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAACGCCAAAAA
194 A-TTTTTGCCACAATACTCAGAAAAAAATATATAATTCAACGCCAAAAA
7021 TATTCACGGG
Statistics
Matches: 220, Mismatches: 18, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
247 25 0.11
248 43 0.20
249 126 0.57
250 26 0.12
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (249 bp):
ATGCTCGAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATAAATATAGATATTT
AAAGGAGTCTTCGCGCAAAAAATTATGCAAAATTAAGCCGGGGCTCCGGAACACATTTTTAGCCA
AAAACCGTGATGGTTAGTACACGATTTTCGGCTAAAAACTGACCCGAAAATTTTTTTTTCTCAAT
TTTTGCCACAATACTCAGAAAAAAATATATAATTCAACGCCAAAAAAAATTCAG
Found at i:8807 original size:330 final size:326
Alignment explanation
Indices: 8333--11316 Score: 2394
Period size: 330 Copynumber: 9.1 Consensus size: 326
8323 TTTTATTAAC
* * * * *
8333 TTTTTTCCACAATACTCAGAAAAGAGTATATAATTCAACACGAAAAAGATTG-AGGGCTTTTCAC
1 TTTTTTGCACAATACTCAGAAAA-AATATATAATTCAACGCCAAAAA-ATTGAAGGGTTTTTCAC
* * * * *
8397 GCTTCTAATATCATTTTTCCTTTTTTTTCAAATTAATTTTTAATTAAATCGAAATAAGATTCAGA
64 GCTTCTAATATCATTTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGA
* * * * ** *
8462 TGCTCGTAAAAACAAATCCTTATATCTAAAGTGGTTGAGATCTGACTCGATGAACATAGATATTT
129 TGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTT
* * ** *
8527 CAAGGAGTCTATGCACCAAAAATCATGTAAAATTGAGCTAGGACTCAGGAATTCGTTTTTTGCAA
194 CAAGGAGTCTATGCACCAAAAATCATGCAAAATTGAGCTAGGACTCCGGAACACGTTTTTAGCAA
*
8592 AAACCGGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACGGAACAGAAACGTTTTC
259 AAACC-GTGATGGTTAGTACACGATTTCGGCTAAAATTTTG-AAAAACTGAACAGAAA-GTTTTC
*
8657 CCTCTA
321 TCTCTA
* * * *
8663 TTTTTTGCACAATACTCAGAAAAAATATATAATTCAGCGCCAAAGTAATTGAAGGGTTTTTTACA
1 TTTTTTGCACAATACTCAGAAAAAATATATAATTCAACGCCAAA-AAATTGAAGGGTTTTTCACG
* * * *
8728 CTTCTAATATCATTTTTCCATTTTATCCGAATTTATTTCTAAGTAAATCGAAACAAGATCCAGAT
65 CTTCTAATATCATTTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGAT
* *
8793 GCTCGTAAAAACAAATCCTTATATCAAATGTGGCTGCA-ATTAGGTTCGATGAATATAGATATTT
130 GCTCGTAAAAACAAATCCTTATATCCAATGTGGCTG-AGATTTGGTTCGATGAATATAGATATTT
* * * * *
8857 GAAGGAGTCTTTGC-GCAAAATATTATGCAAAATTGAGGC--GGTGCTCCGGAACACGTTTTTAG
194 CAAGGAGTCTATGCACCAAAA-ATCATGCAAAATTGA-GCTAGG-ACTCCGGAACACGTTTTTAG
* ** * * *
8919 CTAAAAACCGTGATGG--AGGTACACGATTTAGGCTAAAA-ACTG---ACCCG-A-A-AAATTTT
256 C-AAAAACCGTGATGGTTA-GTACACGATTTCGGCTAAAATTTTGAAAAACTGAACAGAAAGTTT
* *
8975 TTTCTCAA
319 TCTCTCTA
* * * * * * *
8983 TTTTTTGCCACAATACACAGAAAAAAATTTATAATTCAATGCCAAAAAGATTCACGGGTTGTACA
1 TTTTTTG-CACAATACTCAG-AAAAAATATATAATTCAACGCCAAAAA-ATTGAAGGGTTTTTCA
* * *
9048 CGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTTTAATTAAATCGAAATAAGATTCA
63 CGCTTCTAATATCATTTTTCCA-TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCA
* * ** *
9113 GATGCTCGTAAAAACAAATCCTTATATCCAATTTGGCTGATATTTGACTCGATGAA-ATTGATAT
127 GATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATAT
* * * *
9177 TTCAAGGAGTATATGCACCAAAAGTCATGTAAAATTGAGCTAGGACTCCGGAACTCGTTTTTAGC
192 TTCAAGGAGTCTATGCACCAAAAATCATGCAAAATTGAGCTAGGACTCCGGAACACGTTTTTAGC
* * *
9242 AAAAATCGGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCTGAAAAGTTT
257 AAAAA-CCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTG-AAAAACTGAACAG-AAAGTTT
*
9307 TCCCTCTA
319 TCTCTCTA
9315 TTTTTTGCACAATACTCTA-AAAAAATATATAATTCAACGCCAAAGAAATTGAAGGG-TTTTCTA
1 TTTTTTGCACAATACTC-AGAAAAAATATATAATTCAACGCCAAA-AAATTGAAGGGTTTTTC-A
* * * *
9378 CGCTTCTAATATCATTTTTCCATTTTTTCCCGAATTTATTTCTAATTAAATTGAAAGAAGATCCA
63 CGCTTCTAATATCATTTTTCCATTTTTT-CCGAATTAATTTCTAATTAAATCGAAACAAGATTCA
* ** * *
9443 GATACTCGTAAAAACAAATAATT-TAATCCAATGTGACTGAGATTTGGTTAGATGAATATAGATA
127 GATGCTCGTAAAAACAAATCCTTAT-ATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATA
* * * * ** * * *
9507 TTTCAAGAAGTCTAT-CTGCCTAAAATAATGCAAAATTGAGCCGGGGC-CCGAAACGCGTTTTTA
191 TTTCAAGGAGTCTATGC-ACCAAAAATCATGCAAAATTGAGCTAGGACTCCGGAACACGTTTTTA
* ** * * * *
9570 GCCAAAAACCGTTATTTTTGCCAAATCAAACCCAAAAAACTGAATAT-AG-TACATGATTTTCGG
255 G-CAAAAACCGTGATGGTT----AGT---A--C-----AC-G-ATTTCGGCTA-A-AATTTT--G
* * * *
9633 CTAAAAACTGACCCAAAAAGGTTT-TCTCAA
299 --AAAAACTGA-ACAGAAAGTTTTCTCTCTA
* * * *
9663 TTTTTTGCCACAATACTCAG-AAAAATTTATAATTCAACACAAAAGAAATTGAAGGATTTTTCA-
1 TTTTTTG-CACAATACTCAGAAAAAATATATAATTCAACGCCAAA-AAATTGAAGGGTTTTTCAC
* * ** * *
9726 -CTTTTAATATCATTTTTCCATTTTTTCCGAGTTTGTTTCTAATTAAATAGAAACAAGATTTAGA
64 GCTTCTAATATCATTTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGA
* **
9790 TACTCGTAAAAACATAA-CCTTATATCCAATGTGGCTGAGATTTGGTTAAATGAATATAGATATT
129 TGCTCGTAAAAACA-AATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATT
* *** * * * *
9854 TCAAGGAGTCTTTTTGCCAAAAATCATGC-AAATCTGAACAAGGAC-CTCGAAACGCGTTTTTAG
193 TCAAGGAGTCTATGCACCAAAAATCATGCAAAAT-TGAGCTAGGACTC-CGGAACACGTTTTTAG
* * * * * *
9917 CCAAAAAATCGTTATGGTTAGTACATGATTTC-G-----A--CT-AAAAACTGACCTG-AA----
256 -C-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGAAAAACTGAACAGAAAGTTT
9968 -----C-A
319 TCTCTCTA
* * * * *
9970 -TTTTTGCCACAATTCTCATAAAAAGTATATAATTCAACACCAAAAAGATTG-AGGGCTTTTCAC
1 TTTTTTG-CACAATACTCAGAAAAAATATATAATTCAACGCCAAAAA-ATTGAAGGGTTTTTCAC
* * **
10033 GCTTCAAAATTCAAATATCATTTTTCCCTTTTTTTCGGAATTAATTTCTTGTTAAATCGAAACAA
64 GCTTC-----T--AATATCATTTTT-CCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAA
* * *
10098 GATTCAAATTCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGCTCGATGAATAT
121 GATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATAT
* * * * * * *
10163 CGATATTTGAAGGAGTCTTTGC-TCATAAAATCATGCAAAATTGAGCTGGGGCTCCGGAATACGT
186 AGATATTTCAAGGAGTCTATGCACCA-AAAATCATGCAAAATTGAGCTAGGACTCCGGAACACGT
* * *
10227 TTTTAGCCAAAAACCATGATGGTTAGTACACGATTTC-G-------TCT-AAAAACT-AACCGAA
250 TTTTAG-CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGAAAAACTGAACAGAA
* *
10282 A-TTTTTTTTCTCA
314 AGTTTTCTCTCT-A
* * * * * *
10295 ATTTTTGCCAGAATACTCAGAAAAAATATATAATTCAACGCCAAAAAATTCACGGGCTTTACACG
1 TTTTTTG-CACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAATTGAAGGGTTTTTCACG
* * * * *
10360 CTTCTAATATC-GTTTTCCATTTTTTCCAAATTAATTTTTAATTAAATCAAAATAAGATTCAGAT
65 CTTCTAATATCATTTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGAT
* ** *
10424 GCTCGTAAAAACAAATCCTTTTATCCAATGTGGCTGAGATTTGACTCGATGAACATAGATATTTC
130 GCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTC
* * * * *
10489 AAGGAGTCTATGCACCAAAAATCATGTAAATTTGTG-TCAGGACTCCGGAACTCATTTTTAGCAA
195 AAGGAGTCTATGCACCAAAAATCATGCAAAATTGAGCT-AGGACTCCGGAACACGTTTTTAGCAA
* * * *
10553 AAATCGGTGAT-G---GTACACGATTTCGGCTAAAATTTTGCAAAAAATGACCCGAAAAGTTTTC
259 AAA-CCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTG-AAAAACTGAACAG-AAAGTTTTC
10614 TCTCTA
321 TCTCTA
* * *
10620 TTTTTTGCTACGATACTCAGAAAAATTATATAATTCAACGCCAAAGAAATTGATGGGTTTTTCAC
1 TTTTTTGC-ACAATACTCAGAAAAAATATATAATTCAACGCCAAA-AAATTGAAGGGTTTTTCAC
* * *
10685 GCTTCTAATATCGTTTTTCCATTTTTTTTTCCGAATTTATTTCTTATTAAATCGAAACAAGATTC
64 GCTTCTAATATCATTTTTCCA---TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTC
* * *
10750 AGATGCTCGTAAAAACAAATCATTACATCCAATGTGGGCTGAGATTTGGTTAGATGAATATAGAT
126 AGATGCTCGTAAAAACAAATCCTTATATCCAATGT-GGCTGAGATTTGGTTCGATGAATATAGAT
* * * * * **
10815 ATTTTAAGGAGTCT-TTCTGCCAAAAATCATGC-AAATCTGAAC-AGGGAC-CTCGAAATGCGTT
190 ATTTCAAGGAGTCTATGC-ACCAAAAATCATGCAAAAT-TGAGCTA-GGACTC-CGGAACACGTT
* * ** *
10876 TTTAGCCAAAAACCGTGATAGTTAAGTACATGATTTCGGCTAAAAACTT----ACCTGAAC----
251 TTTAG-CAAAAACCGTGATGGTT-AGTACACGATTTCGGCTAAAATTTTGAAAAACTGAACAGAA
* *
10933 AGTTTTGTAT-TAA
314 AGTTTTCTCTCT-A
* * * * ** * *
10946 ATTTTTGCATCACTACTCAGAAAAAGTATATAATTTAATACCAACAAGATTG-AGGGCTTTTCAC
1 TTTTTTGCA-CAATACTCAGAAAAAATATATAATTCAACGCCAA-AAAATTGAAGGGTTTTTCAC
* * * * *
11010 GCTTCTAATATCGTTTTTCCATTTTTTCCGAATTAATTTTTTATTAAATCAAAACAAGATTCAAA
64 GCTTCTAATATCATTTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGA
* *
11075 TGCTCGTAAAAACAAATTCTTATATCTAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTT
129 TGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTT
* * ** * * *
11140 GAAGGAGTCTTTGCGCAAAAAAAATTATGCAAAATTGAGAC-GGGGCTCCGGAACACGTTTTTA-
194 CAAGGAGTCTAT--GCACCAAAAATCATGCAAAATTGAG-CTAGGACTCCGGAACACGTTTTTAG
* * ** *
11203 CCAAAACCATGTGATGGTTAGTAGACGATTTCGGCTAAAA-ACTG---ACCTG---A-AAAGTTC
256 CAAAAACC--GTGATGGTTAGTACACGATTTCGGCTAAAATTTTGAAAAACTGAACAGAAAGTT-
*
11260 TTTTCT-TAA
318 TTCTCTCT-A
*
11269 TTTTTTTGCCACAACACTCAGAAAAAATATATAATTCAACGCCAAAAA
1 -TTTTTTG-CACAATACTCAGAAAAAATATATAATTCAACGCCAAAAA
11317 GATTCACAGG
Statistics
Matches: 2162, Mismatches: 342, Indels: 307
0.77 0.12 0.11
Matches are distributed among these distances:
306 28 0.01
307 26 0.01
308 4 0.00
313 13 0.01
314 4 0.00
315 53 0.02
316 147 0.07
317 156 0.07
318 15 0.01
319 6 0.00
320 15 0.01
321 74 0.03
322 211 0.10
323 165 0.08
324 52 0.02
325 83 0.04
326 140 0.06
327 8 0.00
328 6 0.00
329 57 0.03
330 416 0.19
331 151 0.07
332 27 0.01
333 1 0.00
334 2 0.00
336 21 0.01
337 1 0.00
338 1 0.00
339 1 0.00
340 1 0.00
343 2 0.00
344 8 0.00
345 121 0.06
346 54 0.02
347 13 0.01
348 46 0.02
349 31 0.01
350 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (326 bp):
TTTTTTGCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAATTGAAGGGTTTTTCACGC
TTCTAATATCATTTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATG
CTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCA
AGGAGTCTATGCACCAAAAATCATGCAAAATTGAGCTAGGACTCCGGAACACGTTTTTAGCAAAA
ACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGAAAAACTGAACAGAAAGTTTTCTCTCT
A
Done.