Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020808.1 Corchorus olitorius cultivar O-4 contig20841, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145329

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1658
331
5.1
327
80
7
1735
35
16
13
34
1.89
1--1658
653
2.5
653
87
3
2254
35
16
13
34
1.89
5215--5265
22
2.3
22
82
3
57
49
13
9
27
1.74
5959--6009
17
3.1
16
86
8
66
35
21
21
21
1.96
18905--18948
20
2.3
19
84
11
54
70
0
2
27
0.99
18907--18954
19
2.6
18
79
20
55
72
0
2
25
0.95
42344--42382
19
2.0
21
85
10
55
61
10
12
15
1.56
62655--62820
84
2.0
84
85
0
224
25
25
16
31
1.96
63069--63275
111
1.9
111
84
2
281
23
23
17
35
1.96
84362--84395
12
2.8
12
100
0
68
58
14
8
17
1.61
84424--84448
13
1.9
13
100
0
50
40
16
12
32
1.84
87021--87086
33
2.0
33
96
0
123
43
12
13
30
1.80
89203--89291
18
4.9
18
76
5
99
30
22
14
32
1.94
97020--97049
1
30.0
1
100
0
60
100
0
0
0
0.00
105409--105524
56
2.1
57
93
1
198
38
0
25
35
1.62
109509--109540
3
10.7
3
93
0
55
62
3
34
0
1.11
113541--113596
21
2.8
19
81
5
67
35
10
19
33
1.87
117894--117930
2
18.5
2
100
0
74
51
0
0
48
1.00
118252--118287
3
12.0
3
100
0
72
66
0
0
33
0.92
121594--121674
42
1.9
42
97
0
153
29
7
16
46
1.73
127354--127399
22
2.2
20
88
11
65
78
0
19
2
0.86
136165--136196
7
4.6
7
92
0
55
15
43
0
40
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
142966--145294
321
7.3
322
88
3
3097
33
14
16
35
1.89
142966--145292
643
3.6
643
86
4
3104
33
14
16
35
1.89
145301--145329
1
29.0
1
100
0
58
0
0
0
100
0.00

Tables:   1

The End!