Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020810.1 Corchorus olitorius cultivar O-4 contig20843, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144735

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19950--20055
32
3.3
32
97
1
194
52
27
0
19
1.46
20035--20182
74
2.0
74
98
0
287
38
22
15
22
1.92
22727--22764
18
2.1
19
90
5
60
42
21
23
13
1.88
23448--23479
3
10.7
3
93
0
55
37
0
34
28
1.57
35996--36020
6
4.2
6
100
0
50
48
0
36
16
1.46
66215--66256
22
1.9
22
100
0
84
30
9
40
19
1.83
85434--85464
15
2.1
15
93
0
53
25
25
25
22
2.00
99687--99720
3
11.3
3
93
0
59
32
0
29
38
1.58
106172--106198
7
3.9
7
100
0
54
40
14
14
29
1.86
117072--117987
319
2.9
321
87
3
1224
35
17
15
30
1.92
117031--117966
322
2.9
321
85
4
1208
35
18
15
30
1.91
118427--119683
331
3.8
320
79
9
1335
34
16
15
33
1.91
119635--120146
238
2.2
230
90
4
801
40
14
11
33
1.82
119975--120795
315
2.5
319
81
7
933
34
16
14
33
1.90
119740--121916
853
2.5
857
88
5
3089
35
16
14
33
1.89
121817--122250
218
2.0
218
89
2
658
35
19
16
28
1.94
124724--125543
318
2.5
321
81
6
906
34
17
14
33
1.90
124100--127282
880
3.6
878
91
2
5068
35
16
14
33
1.89
126460--127288
322
2.5
320
83
5
929
33
16
14
34
1.90
127613--127648
15
2.4
15
85
0
54
66
2
0
30
1.06
129868--129907
20
2.0
20
100
0
80
30
5
15
50
1.65
130194--130227
6
5.7
6
86
13
52
82
17
0
0
0.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
136175--136199
12
2.1
12
100
0
50
84
16
0
0
0.63

Tables:   1

The End!