Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020811.1 Corchorus olitorius cultivar O-4 contig20844, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67369

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3894--3951
21
2.9
19
79
5
62
34
15
12
37
1.85
4777--4810
12
2.8
12
86
0
50
85
2
8
2
0.80
8820--8850
6
5.0
6
96
4
53
80
3
16
0
0.83
14938--14965
14
2.0
14
100
0
56
14
35
14
35
1.86
15944--16031
42
2.1
43
93
4
153
28
5
14
51
1.65
22369--22498
66
2.0
65
89
4
199
39
8
16
36
1.79
25365--25402
17
2.2
17
95
0
67
39
10
26
23
1.87
26640--26689
26
2.0
25
88
4
73
72
0
24
4
1.02
29229--29291
29
2.2
29
88
0
90
46
14
15
23
1.83
40527--40612
43
2.0
43
95
0
154
40
16
16
26
1.89
46141--46200
29
2.1
29
96
0
111
25
18
28
28
1.98
50768--51053
143
2.0
143
99
0
563
30
12
27
29
1.94
67332--67367
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!