Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020814.1 Corchorus olitorius cultivar O-4 contig20847, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18050

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
175--455
62
4.5
62
98
0
528
35
22
39
3
1.70
427--517
34
2.7
34
98
0
173
47
17
31
3
1.64
1346--1453
45
2.4
45
85
1
128
37
16
24
22
1.94
1369--1469
45
2.2
45
94
0
175
30
21
22
24
1.99
9355--9391
2
18.5
2
100
0
74
48
0
0
51
1.00
11475--11533
19
3.0
19
83
9
82
32
20
10
37
1.86
13923--13956
16
2.1
16
89
10
52
52
5
0
41
1.25
15689--15721
7
4.9
7
88
7
50
42
9
3
45
1.51
15696--15720
13
1.9
13
100
0
50
40
12
0
48
1.40
15975--16041
21
3.2
21
66
16
57
52
11
1
34
1.48
16156--16568
202
2.0
204
91
4
674
36
11
7
44
1.70

Tables:   1

The End!