Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020815.1 Corchorus olitorius cultivar O-4 contig20848, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61165

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2966--2999
10
3.4
10
87
0
50
41
0
8
50
1.34
10839--10876
19
2.0
19
90
10
60
28
15
13
42
1.85
10966--11015
26
1.9
26
83
0
64
32
22
10
36
1.87
17744--17779
2
18.0
2
100
0
72
50
0
0
50
1.00
18490--18547
19
2.8
20
79
10
64
36
13
20
29
1.91
29161--29193
6
5.7
6
85
7
50
84
0
12
3
0.72
29159--29193
11
3.1
11
88
8
52
85
0
11
2
0.69
29909--29969
32
1.9
33
83
12
83
29
19
13
37
1.90
31873--31917
23
2.0
22
91
8
74
51
0
13
35
1.41
37448--37480
16
2.1
16
100
0
66
30
6
27
36
1.81
37978--38038
30
2.1
30
90
6
99
50
13
6
29
1.66
38645--38702
29
2.0
28
90
3
89
53
25
0
20
1.46
51960--51996
19
2.0
19
89
5
58
64
0
0
35
0.94
56583--56622
20
2.0
20
100
0
80
20
20
25
35
1.96
60409--60455
24
1.9
24
91
4
76
44
12
8
34
1.73

Tables:   1

The End!