Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020816.1 Corchorus olitorius cultivar O-4 contig20849, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113274

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12434--12516
39
2.1
39
93
4
141
31
18
48
2
1.61
24168--24248
36
2.4
32
82
15
92
46
8
9
34
1.68
24168--24249
33
2.4
37
84
13
104
47
8
9
34
1.67
26854--26890
19
1.9
19
94
0
65
40
13
16
29
1.86
30298--30331
7
4.9
7
92
0
59
14
14
29
41
1.86
32047--32105
29
2.1
28
81
15
68
37
3
18
40
1.68
33575--33618
14
3.1
14
80
6
61
29
2
29
38
1.69
38124--38162
15
2.6
15
91
0
60
2
23
10
64
1.37
40063--40166
52
2.0
50
94
3
181
31
14
11
42
1.81
43208--43276
23
3.0
23
71
2
57
44
4
0
50
1.21
45750--45778
2
14.5
2
100
0
58
51
0
0
48
1.00
57878--57935
19
2.9
19
84
5
62
31
20
12
36
1.89
57899--57935
19
1.9
19
94
0
65
29
18
13
37
1.90
59241--59309
36
1.9
36
82
5
86
27
8
13
50
1.70
73055--73091
10
3.5
10
86
13
56
54
0
45
0
1.00
73062--73091
12
2.5
12
94
0
51
53
0
46
0
1.00
77258--77378
59
2.1
59
93
1
208
34
10
21
33
1.88
80555--80597
21
2.2
20
87
8
61
44
11
11
32
1.77
84626--84662
16
2.3
16
90
9
58
0
29
2
67
1.04
86195--86252
28
2.0
29
90
6
91
39
10
25
24
1.87
95647--95679
16
2.1
16
100
0
66
51
18
0
30
1.46
96315--96348
1
34.0
1
93
0
50
0
5
0
94
0.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96431--96476
21
2.1
22
88
4
67
56
6
4
32
1.45
100763--100810
22
2.2
22
96
0
87
25
25
4
45
1.71
102187--102263
35
2.2
35
100
0
154
28
15
24
31
1.96
109665--109699
2
18.0
2
88
5
54
54
0
0
45
0.99

Tables:   1

The End!