Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020818.1 Corchorus olitorius cultivar O-4 contig20851, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26892

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2144--2197
28
1.9
28
96
0
99
51
12
3
31
1.57
4057--4085
2
14.5
2
100
0
58
48
0
0
51
1.00
5054--5111
27
2.1
27
81
15
66
46
6
0
46
1.29
6118--6175
24
2.4
25
80
8
75
0
15
17
67
1.24
6806--6855
21
2.4
21
89
0
73
32
18
40
10
1.83
12829--12872
19
2.3
19
100
0
88
27
4
9
59
1.48
12841--12883
19
2.3
19
84
4
52
27
9
6
55
1.57
13194--13431
120
2.0
120
94
0
413
36
15
20
26
1.93
13426--13585
82
2.0
82
92
0
266
34
23
15
26
1.95
14404--14442
14
2.9
13
80
3
51
53
2
2
41
1.28
14428--14682
131
2.0
127
91
6
419
49
1
10
38
1.47
14435--14690
123
2.0
127
88
6
349
50
1
10
37
1.48
17953--18006
28
1.9
28
88
0
81
37
12
12
37
1.83
19653--19704
25
2.1
25
92
0
86
38
13
26
21
1.90
20629--20818
91
2.0
92
91
6
310
35
13
11
38
1.81
25719--26892
340
3.5
335
89
2
1756
32
15
17
34
1.91

Tables:   1

The End!